Schema for xenoMrna
  Database: chrPic1    Primary Table: xenoMrna    Row Count: 7,503,240   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 263int(10) unsigned Number of bases that match that aren't repeats
misMatches 42int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 3int(10) unsigned Number of inserts in query
qBaseInsert 63int(10) unsigned Number of bases inserted in query
tNumInsert 6int(10) unsigned Number of inserts in target
tBaseInsert 718int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName EU948080varchar(255) Query sequence name
qSize 571int(10) unsigned Query sequence size
qStart 161int(10) unsigned Alignment start position in query
qEnd 529int(10) unsigned Alignment end position in query
tName AHGY01246042varchar(255) Target sequence name
tSize 1978int(10) unsigned Target sequence size
tStart 586int(10) unsigned Alignment start position in target
tEnd 1609int(10) unsigned Alignment end position in target
blockCount 7int(10) unsigned Number of blocks in alignment
blockSizes 35,18,135,18,30,30,39,longblob Size of each block
qStarts 161,196,214,367,403,460,490,longblob Start of each block in query.
tStarts 369,405,1075,1215,1264,1321...longblob Start of each block in target.

Connected Tables and Joining Fields
        chrPic1.all_mrna.qName (via xenoMrna.qName)
      chrPic1.xenoRefFlat.name (via xenoMrna.qName)
      chrPic1.xenoRefGene.name (via xenoMrna.qName)
      chrPic1.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58526342003636718+-EU948080571161529AHGY0124604219785861609735,18,135,18,30,30,39,161,196,214,367,403,460,490,369,405,1075,1215,1264,1321,1353,
58590914089211210+-BT01731712601881211AHGY0124604219785871609446,91,851,24,188,234,335,1187,369,416,516,1367,
5853541400333654+-EU941505604186557AHGY0124604219785871609747,6,18,139,112,22,24,186,233,239,258,397,510,533,369,417,1075,1093,1233,1345,1367,
5852092500163164++FX137495972577874AHGY0152738553002982178,56,577,818,0,242,
5857811001232679+-EU941411526221333AHGY0124604219788411609332,21,36,221,253,297,369,402,1101,
5858010001232679+-EU942143980695808AHGY0124604219788411610333,21,36,695,728,772,368,402,1101,
58514510001211+-JW2125092300157AHGY0147232364427183351,17,87,0,53,70,461,512,530,
5857113001222678+-EU941453470182288AHGY0124604219788471609339,15,30,182,221,258,369,409,1101,
5857113001222678+-EU942385501193299AHGY0124604219788471609339,15,30,193,232,269,369,409,1101,
5857113001222678+-EU951708678167273AHGY0124604219788471609339,15,30,167,206,243,369,409,1101,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.