Schema for intronEst
  Database: ci3    Primary Table: intronEst    Row Count: 700,066   Data last updated: 2015-08-26
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 605smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 356int(10) unsigned Number of bases that match that aren't repeats
misMatches 14int(10) unsigned Number of bases that don't match
repMatches 68int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 1int(10) unsigned Number of bases inserted in query
tNumInsert 4int(10) unsigned Number of inserts in target
tBaseInsert 1384int(10) unsigned Number of bases inserted in target
strand +char(2) + or - for strand. First character query, second target (optional)
qName AB091082varchar(255) Query sequence name
qSize 439int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 439int(10) unsigned Alignment end position in query
tName chr4varchar(255) Target sequence name
tSize 5505748int(10) unsigned Target sequence size
tStart 2695060int(10) unsigned Alignment start position in target
tEnd 2696882int(10) unsigned Alignment end position in target
blockCount 6int(10) unsigned Number of blocks in alignment
blockSizes 73,40,71,120,94,40,longblob Size of each block
qStarts 0,73,114,185,305,399,longblob Start of each block in query.
tStarts 2695060,2695315,2695355,269...longblob Start of each block in target.

Connected Tables and Joining Fields
        ci3.all_est.qName (via intronEst.qName)
      ci3.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
605356146801141384+AB0910824390439chr4550574826950602696882673,40,71,120,94,40,0,73,114,185,305,399,2695060,2695315,2695355,2695870,2696425,2696842,
591394210113599-AB0910873980398chr55035970800099801095576,155,81,40,45,0,76,231,313,353,800099,800176,800332,800413,801050,
58642536700021028+AB0910814950495chrUn_NW_004190369v12769001976671991903139,174,182,0,139,313,197667,198536,199008,
5853297150003960-AB0910803560351chrUn_NW_004190371v13156813044131752438,127,69,117,5,43,170,239,30441,31013,31427,31635,
58521110002331184-AJ4945782270224chr1100410056914370548556,56,5,53,51,3,61,117,123,176,69143,69736,69793,69798,70497,
587329727021231214+AJ4939783750375chr11004100534921035078766,27,10,61,182,77,0,6,44,55,116,298,349210,349217,349244,349254,350270,350710,
58830161900021570-AJ4938143260326chr1100410054080794099753117,170,39,0,117,287,408079,409365,409936,
58848112600032398-AJ4952445091509chr1100410054107064136124107,140,133,128,0,107,247,380,410706,412023,412835,413484,
5921772500011515-AJ49393128298282chr11004100510418321043531256,128,0,56,1041832,1043403,
59336634600041598-AJ4940264150415chr11004100510827301084743526,75,118,113,83,0,26,101,219,332,1082730,1083107,1083734,1084202,1084660,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.