Schema for all_est
  Database: criGriChoV1    Primary Table: all_est    Row Count: 12   Data last updated: 2017-04-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 593smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 89int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AF022944varchar(255) values Query sequence name
qSize 192int(10) unsigned range Query sequence size
qStart 103int(10) unsigned range Alignment start position in query
qEnd 192int(10) unsigned range Alignment end position in query
tName NW_003613702v1varchar(255) values Target sequence name
tSize 2718596int(10) unsigned range Target sequence size
tStart 1125867int(10) unsigned range Alignment start position in target
tEnd 1125956int(10) unsigned range Alignment end position in target
blockCount 1int(10) unsigned range Number of blocks in alignment
blockSizes 89,longblob   Size of each block
qStarts 0,longblob   Start of each block in query.
tStarts 1125867,longblob   Start of each block in target.

Connected Tables and Joining Fields
        criGriChoV1.all_mrna.qName (via all_est.qName)
      criGriChoV1.estOrientInfo.name (via all_est.qName)
      criGriChoV1.intronEst.qName (via all_est.qName)
      criGriChoV1.refGene.name (via all_est.qName)
      criGriChoV1.refSeqAli.qName (via all_est.qName)
      criGriChoV1.xenoRefGene.name (via all_est.qName)
      criGriChoV1.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
593890000000-AF022944192103192NW_003613702v1271859611258671125956189,0,1125867,
5922600000021750+AF0229422600260NW_003613904v11664011951344953354347,109,104,0,47,156,951344,953063,953250,
5921630002426+AF02294122255222NW_003613904v11664011954785954954426,4,109,24,55,81,86,198,954785,954812,954816,954930,
5862080003333+AF0229382176217NW_003614036v11348730191847192058733,13,13,69,60,3,17,6,40,53,67,137,197,200,191847,191880,191894,191907,191976,192037,192041,
586261000002661-AF0229392610261NW_003614036v11348730192105193027312,52,197,0,12,64,192105,192118,192830,
586223000113662-AF0229402320224NW_003614036v11348730192119193004531,7,12,86,87,8,39,47,59,145,192119,192151,192158,192830,192917,
5901051000000+AF0229441920106NW_003614171v110710547489537490591106,0,748953,
5881762001100-AF0229451790179NW_003614789v14916124553124554902166,12,0,167,455312,455478,
585130410000012405+AF1809181344291343NW_003618845v12863217387211062108,1206,29,137,17387,19900,
60897650000821573-FK0416769810981NW_003613633v13665631308878431113389105,81,144,92,166,141,108,12,132,0,105,186,330,422,588,729,837,849,3088784,3090729,3091712,3092388,3094904,3095846,3096799,3103264,3111206,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.