Schema for mrnaOrientInfo
  Database: criGriChoV1    Primary Table: mrnaOrientInfo    Row Count: 70,662   Data last updated: 2020-05-07
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 590smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom NW_003613580v1varchar(255) values Reference sequence chromosome or scaffold
chromStart 736931int(10) unsigned range Start position in chromosome
chromEnd 738552int(10) unsigned range End position in chromosome
name JI870364varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 23smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        criGriChoV1.all_mrna.qName (via mrnaOrientInfo.name)
      criGriChoV1.refFlat.name (via mrnaOrientInfo.name)
      criGriChoV1.refGene.name (via mrnaOrientInfo.name)
      criGriChoV1.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
590NW_003613580v1736931738552JI870364100023
590NW_003613580v1736931738552JP052302100023
590NW_003613580v1739307739891JI874075000130
590NW_003613580v1739335739891JP061733000130
74NW_003613580v118345701835112JI890891000170
74NW_003613580v118345701835112JP040089000170
599NW_003613580v118353501835856JI87317300000
599NW_003613580v118353501835856JP04776900000
599NW_003613580v118552131855945JI86976510000
599NW_003613580v118552131855945JP05905610000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.