Schema for xenoRefFlat
  Database: criGriChoV1    Primary Table: xenoRefFlat    Row Count: 463,610   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName LOC534913varchar(255) values Name of gene as it appears in genome browser.
name NM_001083726varchar(255) values Name of gene
chrom NW_003613769v1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 680284int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 680386int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 680284int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 680386int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 680284,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 680386,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        criGriChoV1.xenoRefGene.name (via xenoRefFlat.name)
      criGriChoV1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
LOC534913NM_001083726NW_003613769v1-6802846803866802846803861680284,680386,
Pnpla1NM_001034885NW_003614566v1-11391314558211680314512718113913,114010,114310,114339,114850,115581,116803,116883,117403,119187,120018,120162,123004,123811,124914,144917,145414,145499,113979,114053,114327,114350,114868,115644,116874,116913,117457,119206,120162,120254,123065,124021,124982,145324,145463,145582,
asnsNM_001140170NW_003614767v1+14856716331914857616331910148567,152343,155937,156400,158521,161083,161425,162361,162530,163163,148816,152559,156042,156526,158648,161190,161526,162444,162670,163319,
SPTBN1NM_001199425NW_003614016v1+14339826209914344026100143143398,197820,198563,206918,209032,211163,211566,213576,214390,216192,217225,217971,219838,221051,222014,222859,224425,231823,23 ...143586,197974,198567,207088,209123,211241,211684,213689,214579,216309,217384,218274,219994,221920,222152,223616,224628,231914,23 ...
LOC606724NR_002454NW_003614830v1-647765886588658816477,6588,
Gm16630NR_152251NW_003613842v1+184692118472821847282184728241846921,1847089,1847152,1847235,1846942,1847117,1847225,1847282,
PI-4KBETA1NM_125803NW_003613699v1-240481924110562404819241105622404819,2410987,2404945,2411056,
Fam107aNM_001360337NW_003614849v1-15528516990615744316053321155285,155602,155785,155941,156016,156054,156153,156433,156562,156600,156716,156915,157036,157137,157239,157345,158680,160363,16 ...155376,155698,155853,155953,156029,156065,156320,156454,156589,156635,156761,156997,157096,157229,157269,157546,158833,160541,16 ...
Vmn2r59NM_001105056NW_003613904v1-2112232357002112232357007211223,233377,234497,234612,234742,234860,235417,212030,233512,234560,234643,234797,235081,235700,
ZNF320NM_207333NW_003614705v1-2619014917672619014917678261901,284483,284750,284939,481699,482095,482238,491646,261958,284582,284810,284978,481927,482154,482530,491767,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.