Schema for xenoMrna
  Database: danRer10    Primary Table: xenoMrna    Row Count: 3,184,561   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 265int(10) unsigned Number of bases that match that aren't repeats
misMatches 131int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 75int(10) unsigned Number of bases inserted in query
tNumInsert 3int(10) unsigned Number of inserts in target
tBaseInsert 4555int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JT031240varchar(255) Query sequence name
qSize 574int(10) unsigned Query sequence size
qStart 82int(10) unsigned Alignment start position in query
qEnd 553int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 58871917int(10) unsigned Target sequence size
tStart 6670int(10) unsigned Alignment start position in target
tEnd 11621int(10) unsigned Alignment end position in target
blockCount 4int(10) unsigned Number of blocks in alignment
blockSizes 72,105,138,81,longblob Size of each block
qStarts 82,154,265,472,longblob Start of each block in query.
tStarts 58860296,58861726,58862223,...longblob Start of each block in target.

Connected Tables and Joining Fields
        danRer10.all_est.qName (via xenoMrna.qName)
      danRer10.all_mrna.qName (via xenoMrna.qName)
      danRer10.refGene.name (via xenoMrna.qName)
      danRer10.refSeqAli.qName (via xenoMrna.qName)
      danRer10.xenoRefFlat.name (via xenoMrna.qName)
      danRer10.xenoRefGene.name (via xenoMrna.qName)
      danRer10.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5852651310027534555+-JT03124057482553chr158871917667011621472,105,138,81,82,154,265,472,58860296,58861726,58862223,58865166,
5851153200110812850+-EZ547391391107362chr158871917667396702114,33,107,329,58862247,58865211,
5851508100212023242+-AY307168553153504chr158871917667310146366,93,72,153,264,432,58861771,58862268,58865172,
58517410500110523194+-AY814371542129513chr158871917667310146366,141,72,129,195,441,58861771,58862223,58865172,
5851711050017523197+-EZ000043688308659chr158871917667310146366,138,72,308,374,587,58861771,58862223,58865172,
5851711050017523197+-FN316057536156507chr158871917667310146366,138,72,156,222,435,58861771,58862223,58865172,
5851711050017523197+-FN316059558153504chr158871917667310146366,138,72,153,219,432,58861771,58862223,58865172,
5851711050017523197+-FN322248533153504chr158871917667310146366,138,72,153,219,432,58861771,58862223,58865172,
5851711050017523197+-FN322249533153504chr158871917667310146366,138,72,153,219,432,58861771,58862223,58865172,
5851711050017523197+-FN322250533153504chr158871917667310146366,138,72,153,219,432,58861771,58862223,58865172,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.