Schema for intronEst
  Database: danRer11    Primary Table: intronEst    Row Count: 1,100,891   Data last updated: 2017-11-01
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 501int(10) unsigned Number of bases that match that aren't repeats
misMatches 0int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 5int(10) unsigned Number of inserts in target
tBaseInsert 4478int(10) unsigned Number of bases inserted in target
strand +char(2) + or - for strand. First character query, second target (optional)
qName AA606126varchar(255) Query sequence name
qSize 501int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 501int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 59578282int(10) unsigned Target sequence size
tStart 6642int(10) unsigned Alignment start position in target
tEnd 11621int(10) unsigned Alignment end position in target
blockCount 6int(10) unsigned Number of blocks in alignment
blockSizes 118,64,137,111,25,46,longblob Size of each block
qStarts 0,118,182,319,430,455,longblob Start of each block in query.
tStarts 6642,6891,9557,10080,11549,...longblob Start of each block in target.

Connected Tables and Joining Fields
        danRer11.all_est.qName (via intronEst.qName)
      danRer11.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5855010000054478+AA6061265010501chr1595782826642116216118,64,137,111,25,46,0,118,182,319,430,455,6642,6891,9557,10080,11549,11575,
5851932006761487-AA5497952090202chr1595782821007911761138,6,6,4,13,7,6,4,56,16,11,47,11,7,17,24,31,36,50,57,64,68,124,140,151,198,10079,10087,10093,10099,10103,10116,10124,10130,10135,11549,11566,11578,11750,
5852020000041485-AA5666762170202chr15957828210079117665112,16,12,46,16,15,127,143,155,201,10079,11549,11566,11579,11750,
5864961100001257+AA49483952417524chr1595782821520061527702399,108,17,416,152006,152662,
5861282000071149-AA4949131300130chr159578282156221157500817,7,11,5,9,5,49,27,0,17,24,35,40,49,54,103,156221,156239,156337,156349,156355,156365,156371,157473,
5884619302291552-AA49461948510485chr1595782825117275137521240,11,18,17,57,146,8,18,3,5,95,55,0,40,51,69,86,144,290,299,317,320,325,420,511727,511768,511916,511935,511953,512010,512157,512165,512347,513594,513601,513697,
5894223000042431-AA60592244419444chr159578282588478591334563,24,129,48,161,0,63,87,216,264,588478,589010,589035,590088,591173,
5893843000022106+AA6587273870387chr159578282610691613184393,125,169,0,93,218,610691,611186,613015,
5982955001124988+AA49512835231332chr15957828217121751717463319,160,121,31,51,211,1712175,1712196,1717342,
598116000001321-AA4954351240116chr15957828217309081731345292,24,8,100,1730908,1731321,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.