Schema for mrnaOrientInfo
  Database: danRer3    Primary Table: mrnaOrientInfo    Row Count: 61,746   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 9163int(10) unsigned range Start position in chromosome
chromEnd 208410int(10) unsigned range End position in chromosome
name KC999394varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 2smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        danRer3.all_mrna.qName (via mrnaOrientInfo.name)
      danRer3.mgcFullMrna.qName (via mrnaOrientInfo.name)
      danRer3.mgcGenes.name (via mrnaOrientInfo.name)
      danRer3.refFlat.name (via mrnaOrientInfo.name)
      danRer3.refGene.name (via mrnaOrientInfo.name)
      danRer3.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
73chr19163208410KC99939432000
13chr144084429341098517BC155301524000
73chr1393315535109AY42880116340530
73chr1393316533651AY437405160000
73chr1393420533481BC162118160000
73chr1393573535107AY3519121600180
588chr1393925411546AY437400121000
588chr1393925461803AY4373994330530
588chr1440052441246BC1342193180350
588chr1440057441246BC1525273210410

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.