Schema for intronEst
  Database: danRer5    Primary Table: intronEst    Row Count: 1,026,035   Data last updated: 2017-11-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 210int(10) unsigned Number of bases that match that aren't repeats
misMatches 2int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 1int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 1453int(10) unsigned Number of bases inserted in target
strand -char(2) + or - for strand. First character query, second target (optional)
qName AA497348varchar(255) Query sequence name
qSize 370int(10) unsigned Query sequence size
qStart 157int(10) unsigned Alignment start position in query
qEnd 370int(10) unsigned Alignment end position in query
tName Zv7_NA1048varchar(255) Target sequence name
tSize 31470int(10) unsigned Target sequence size
tStart 11802int(10) unsigned Alignment start position in target
tEnd 13467int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 101,49,62,longblob Size of each block
qStarts 0,101,151,longblob Start of each block in query.
tStarts 11802,12758,13405,longblob Start of each block in target.

Connected Tables and Joining Fields
        danRer5.all_est.qName (via intronEst.qName)
      danRer5.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5852102001121453-AA497348370157370Zv7_NA10483147011802134673101,49,62,0,101,151,11802,12758,13405,
585311000312111737-AA5498103320323Zv7_NA10671348153311035158138,6,5,11,19,6,33,12,52,27,9,61,62,9,18,24,29,43,62,68,101,113,165,192,209,270,33110,33121,33128,33134,33151,33171,33178,33212,33225,34680,34798,34807,35096,
58518103102841048+AA5663222200220Zv7_NA109220035619966212265108,16,45,21,22,0,108,127,177,198,19966,20197,20217,21181,21204,
585220000167413+AA5666802680226Zv7_NA113136500146821018109,41,26,13,13,4,4,10,0,109,150,176,189,202,206,216,1468,1975,2017,2044,2058,2072,2077,2091,
585491400004246-AA6057354950495Zv7_NA1131365004055479656,102,111,128,148,0,6,108,219,347,4055,4062,4250,4519,4648,
585494000003245-AA6058154973497Zv7_NA11313650040894828434,40,111,309,0,34,74,185,4089,4124,4250,4519,
5852038002322803+AA5668282140214Zv7_NA11627616556404594185127,33,9,34,8,0,127,160,170,206,56404,59333,59367,59376,59410,
585407000134789+AA5426524100410Zv7_NA11727536124151253475110,24,138,50,85,0,110,134,272,325,24151,24262,24501,25206,25262,
7327020035185798-AA4945963110277Zv7_NA1172753612615952676652042,50,23,32,7,7,5,17,4,5,5,9,4,3,11,5,7,5,2,29,34,77,127,150,182,189,196,203,220,224,229,236,245,249,252,263,268,275,280,282,261595,261637,262603,262627,262660,262668,262676,262691,262709,262714,262720,262730,262740,262745,262749,262761,262767,262775,26 ...
585183100002796-AA5666232640184Zv7_NA1552210661086711847314,128,42,80,94,222,10867,10882,11805,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.