Schema for all_est
  Database: danRer6    Primary Table: all_est    Row Count: 1,938,995   Data last updated: 2017-11-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 99int(10) unsigned Number of bases that match that aren't repeats
misMatches 0int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 600int(10) unsigned Number of bases inserted in target
strand -char(2) + or - for strand. First character query, second target (optional)
qName AA495302varchar(255) Query sequence name
qSize 447int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 99int(10) unsigned Alignment end position in query
tName Zv8_NA10281varchar(255) Target sequence name
tSize 2288int(10) unsigned Target sequence size
tStart 10int(10) unsigned Alignment start position in target
tEnd 709int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 57,25,17,longblob Size of each block
qStarts 348,405,430,longblob Start of each block in query.
tStarts 10,316,692,longblob Start of each block in target.

Connected Tables and Joining Fields
        danRer6.all_mrna.qName (via all_est.qName)
      danRer6.estOrientInfo.name (via all_est.qName)
      danRer6.intronEst.qName (via all_est.qName)
      danRer6.refGene.name (via all_est.qName)
      danRer6.refSeqAli.qName (via all_est.qName)
      danRer6.xenoMrna.qName (via all_est.qName)
      danRer6.xenoRefGene.name (via all_est.qName)
      danRer6.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58599000002600-AA495302447099Zv8_NA10281228810709357,25,17,348,405,430,10,316,692,
585970000000-AA495053411314411Zv8_scaffold3002869676612266219197,0,66122,
5852053001142350+AA5666912360209Zv8_NA106792845510391129495110,49,22,8,19,0,110,159,181,190,10391,12846,12896,12919,12930,
585950003849+AA5664741030103Zv8_NA1075546853510035204614,32,19,8,18,4,0,14,49,69,81,99,35100,35115,35148,35167,35181,35200,
58545162300011+AA6586744800480Zv8_NA11102104196214432159,321,0,159,962,1122,
585164118901100+AA6058374921356Zv8_NA113298115680098804522102,252,1,104,80098,80200,
5851541001158+AA56669718722178Zv8_NA11661162312492325086663,16,14,31,15,16,22,86,102,116,147,162,24923,24989,25006,25021,25054,25070,
585406000002269-AA49549141812418Zv8_NA1251354171780518480350,92,264,0,50,142,17805,17941,18216,
587502900210362480+AA6059836150614Zv8_NA13804000643590123620038161,55,44,44,60,24,87,36,0,161,216,362,406,466,490,578,359012,360674,361004,361634,361679,361740,361880,361967,
58529117200012-AA6056923640364Zv8_NA17154925810894112602200,164,0,200,10894,11096,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.