Schema for xenoMrna
  Database: dasNov3    Primary Table: xenoMrna    Row Count: 9,174,397   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 141int(10) unsigned Number of bases that match that aren't repeats
misMatches 12int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName AK147385varchar(255) Query sequence name
qSize 7367int(10) unsigned Query sequence size
qStart 1966int(10) unsigned Alignment start position in query
qEnd 2119int(10) unsigned Alignment end position in query
tName AAGV03000183varchar(255) Target sequence name
tSize 1378int(10) unsigned Target sequence size
tStart 455int(10) unsigned Alignment start position in target
tEnd 608int(10) unsigned Alignment end position in target
blockCount 1int(10) unsigned Number of blocks in alignment
blockSizes 153,longblob Size of each block
qStarts 1966,longblob Start of each block in query.
tStarts 770,longblob Start of each block in target.

Connected Tables and Joining Fields
        dasNov3.all_mrna.qName (via xenoMrna.qName)
      dasNov3.xenoRefFlat.name (via xenoMrna.qName)
      dasNov3.xenoRefGene.name (via xenoMrna.qName)
      dasNov3.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58514112000000+-AK147385736719662119AAGV0300018313784556081153,1966,770,
58514211000000+-AY145302644935943747AAGV0300018313784556081153,3594,770,
58514112000000+-BC167231615432863439AAGV0300018313784556081153,3286,770,
58512528000000+-EZ803543401130283AAGV0300018313784556081153,130,770,
58512627000000+-EZ874169842415568AAGV0300018313784556081153,415,770,
5851467001100++JO000980199618021956AAGV0300018313784556082117,36,1802,1920,455,572,
58513419000000+-JR864846607932423395AAGV0300018313784556081153,3242,770,
5851507000000+-AB002297806328793036AAGV0300018313784556121157,2879,766,
5851507000000+-AY145303609332483405AAGV0300018313784556121157,3248,766,
5851507000000+-AY254099845532713428AAGV0300018313784556121157,3271,766,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.