Schema for hgBlastTab
  Database: dm1    Primary Table: hgBlastTab    Row Count: 14,013   Data last updated: 2005-01-08
Format description: Blast alignments of Human genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query CG11023-RAvarchar(255) values Name of sequence in this assembly (query)
target BC045639varchar(255) values Name of sequence in other assembly (target)
identity 40.07float range Percent identity
aliLength 302int(10) unsigned range Length of alignment
mismatch 157int(10) unsigned range Number of mismatches
gapOpen 7int(10) unsigned range Number of gap openings
qStart 180int(10) unsigned range Start in query (0 based)
qEnd 468int(10) unsigned range End in query (non-inclusive)
tStart 351int(10) unsigned range Start in target (0 based)
tEnd 643int(10) unsigned range End in target (non-inclusive)
eValue 7.399999999999999e-54double range Expectation value
bitScore 208.8double range Bit score

Connected Tables and Joining Fields
        dm1.arbExpDistance.query (via hgBlastTab.query)
      dm1.arbExpDistance.target (via hgBlastTab.query)
      dm1.bdgpBlastTab.query (via hgBlastTab.query)
      dm1.bdgpBlastTab.target (via hgBlastTab.query)
      dm1.bdgpCanonical.transcript (via hgBlastTab.query)
      dm1.bdgpGene.name (via hgBlastTab.query)
      dm1.bdgpGenePep.name (via hgBlastTab.query)
      dm1.bdgpIsoforms.transcript (via hgBlastTab.query)
      dm1.bdgpSwissProt.bdgpName (via hgBlastTab.query)
      dm1.bdgpToCanonical.name (via hgBlastTab.query)
      dm1.bdgpToLocusLink.name (via hgBlastTab.query)
      dm1.bdgpToPfam.name (via hgBlastTab.query)
      dm1.bdgpToRefSeq.name (via hgBlastTab.query)
      dm1.blastFBPep00.name (via hgBlastTab.query)
      dm1.drBlastTab.query (via hgBlastTab.query)
      dm1.fbTranscript.transcriptId (via hgBlastTab.query)
      dm1.pscreen.geneIds (via hgBlastTab.query)
      dm1.scBlastTab.query (via hgBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
CG11023-RABC04563940.0730215771804683516437.399999999999999e-54208.8
CG2671-RAD5055037.25102051224096909432e-170597.8
CG2671-RBD5055036.8101951025096109431.0000000000000001e-165581.6
CG2671-RCD5055037.25102051224096909432e-170597.8
CG2671-RDD5055036.66971488230920489438e-156548.9
CG2671-RED5055036.66971488230920489438e-156548.9
CG2671-RFD5055036.66971488230920489438e-156548.9
CG2657-RAAF00901421.962141506832884656710.0000000008262.77
CG31973-RAAF38664926.25160103615731695411000.0006144.28
CG11371-RBU7293622.334973111552997966211310.00000003958.15

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.