Schema for xenoMrna
  Database: dm6    Primary Table: xenoMrna    Row Count: 1,795,111   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 115int(10) unsigned Number of bases that match that aren't repeats
misMatches 9int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 63int(10) unsigned Number of bases inserted in query
tNumInsert 8int(10) unsigned Number of inserts in target
tBaseInsert 5294int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName JT177112varchar(255) Query sequence name
qSize 273int(10) unsigned Query sequence size
qStart 62int(10) unsigned Alignment start position in query
qEnd 249int(10) unsigned Alignment end position in query
tName chr2Lvarchar(255) Target sequence name
tSize 23513712int(10) unsigned Target sequence size
tStart 419int(10) unsigned Alignment start position in target
tEnd 5837int(10) unsigned Alignment end position in target
blockCount 9int(10) unsigned Number of blocks in alignment
blockSizes 17,5,12,17,5,18,15,12,23,longblob Size of each block
qStarts 62,79,84,96,113,118,136,183...longblob Start of each block in query.
tStarts 419,655,1335,2251,2487,3167...longblob Start of each block in target.

Connected Tables and Joining Fields
        dm6.all_est.qName (via xenoMrna.qName)
      dm6.all_mrna.qName (via xenoMrna.qName)
      dm6.refGene.name (via xenoMrna.qName)
      dm6.refSeqAli.qName (via xenoMrna.qName)
      dm6.xenoRefFlat.name (via xenoMrna.qName)
      dm6.xenoRefGene.name (via xenoMrna.qName)
      dm6.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58511590026385294++JT17711227362249chr2L235137124195837917,5,12,17,5,18,15,12,23,62,79,84,96,113,118,136,183,226,419,655,1335,2251,2487,3167,4545,5002,5814,
58528712700133130+-JO847284783186633chr2L23513712873591792360,54,186,579,23504533,23504923,
58528111800247245+-JO881746117889535chr2L2351371287359179354,291,54,89,157,481,23504533,23504602,23504923,
585240123000000++EU21180256825388chr2L23513712881791801363,25,8817,
5852008800174172+-JO89341447292454chr2L2351371288199179293,195,92,259,23504533,23504698,
58517611500127127++HP647667803138456chr2L23513712894092582156,135,138,321,8940,9123,
58520778040016488201553+-KA647055336903369chr2L23513712112141564821715,120,240,132,159,90,297,39,61,104,123,180,33,113,112,9,9,122,103,78,42,0,735,873,1137,1302,1488,1608,1905,1953,2014,2145,2271,2463,2553,2666,2808,2818,3000,3122,3237,3327,23498064,23498857,23498992,23499259,23499430,23499613,23499733,23500087,23500132,23500784,23500903,23501032,23501221,23501314,23 ...
58516088520011990153244+-EZ97682156908084258chr2L2351371211432171361681,2,619,120,126,237,66,165,90,273,108,138,98,127,114,96,808,889,891,1534,1687,1834,2116,2248,2461,2575,2893,3274,3574,3672,4048,4162,23496576,23496979,23498000,23498643,23498854,23498998,23499286,23499424,23499613,23499733,23500090,23501050,23501329,23501491,23 ...
585143766300151059162158+-KA18267543904333592chr2L23513712114531571117138,261,90,75,129,54,150,108,144,75,282,108,81,150,81,99,75,433,736,1033,1144,1234,1396,1474,1663,1816,2011,2110,2401,2605,2731,3097,3418,3517,23498001,23498295,23498592,23498703,23498851,23498998,23499076,23499277,23499439,23499628,23499733,23500090,23500918,23501050,23 ...
58568634600667181572+-JO8744421953641767chr2L235137121149514099990,285,99,75,138,98,112,102,33,64,178,482,746,851,1191,1289,1632,1734,23499613,23499733,23500093,23500939,23501050,23501329,23501491,23501822,23502184,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.