Schema for estOrientInfo
  Database: dp2    Primary Table: estOrientInfo    Row Count: 33,608   Data last updated: 2016-05-25
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Contig1006_Contig943varchar(255) values Reference sequence chromosome or scaffold
chromStart 95533int(10) unsigned range Start position in chromosome
chromEnd 96146int(10) unsigned range End position in chromosome
name CX160179varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        dp2.all_est.qName (via estOrientInfo.name)
      dp2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Contig1006_Contig9439553396146CX16017900000
585Contig1006_Contig9439601596533CX16044220000
586Contig1006_Contig943157926161423CX16044310000
586Contig1006_Contig943157964161419CX16055610000
586Contig1006_Contig943157970161419CX16049010000
586Contig1006_Contig943157972161415CX16007410000
590Contig1006_Contig943779581779799CX16002100000
591Contig1006_Contig943807699808438CX159903100024
74Contig1006_Contig94311781661185072CX16009820000
600Contig1006_Contig94320538132058546CX16059910000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.