Schema for all_mrna
  Database: dp3    Primary Table: all_mrna    Row Count: 214   Data last updated: 2017-10-16
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 596smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 702int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 62int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AF025814varchar(255) values Query sequence name
qSize 705int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 704int(10) unsigned range Alignment end position in query
tName chr2varchar(255) values Target sequence name
tSize 30711475int(10) unsigned range Target sequence size
tStart 1543007int(10) unsigned range Alignment start position in target
tEnd 1543773int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 525,179,longblob   Size of each block
qStarts 0,525,longblob   Start of each block in query.
tStarts 1543007,1543594,longblob   Start of each block in target.

Connected Tables and Joining Fields
        dp3.all_est.qName (via all_mrna.qName)
      dp3.mrnaOrientInfo.name (via all_mrna.qName)
      dp3.xenoMrna.qName (via all_mrna.qName)
      dp3.xenoRefGene.name (via all_mrna.qName)
      dp3.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
59670220000162+AF0258147050704chr230711475154300715437732525,179,0,525,1543007,1543594,
616324103860003638-EU685278362703627chr230711475412004741243124146,1810,156,1515,0,146,1956,2112,4120047,4120259,4122575,4122797,
649144300000631082+JQ433061144301443chr230711475842984384623687692,117,199,69,235,92,39,0,692,809,1008,1077,1312,1404,8429843,8431790,8432825,8461378,8461503,8462166,8462329,
6941245701143137-AM051363125701257chr23071147514343210143446004106,241,803,103,0,106,351,1154,14343210,14343381,14343626,14344497,
7051185000001426+AJ618969118501185chr23071147515816723158183342489,696,0,489,15816723,15817638,
705137703300056239-AJ618970141001410chr23071147515818399158260486348,392,179,57,171,263,0,348,740,919,976,1147,15818399,15818841,15823318,15824585,15825339,15825785,
8925800000374478-U031792580258chr2307114751741629417491030441,51,51,115,0,41,92,143,17416294,17468244,17483501,17490915,
73289002800053203+AJ6189739180918chr2307114751933218919336310654,274,116,138,126,210,0,54,328,444,582,708,19332189,19332296,19333075,19335711,19335900,19336100,
7406320100035488-AM0860236330633chr23071147520355262203613834144,162,260,67,0,144,306,566,20355262,20355471,20355698,20361316,
790966000003181+AY6653839660966chr23071147526886345268874924364,109,287,206,0,364,473,760,26886345,26886767,26886937,26887286,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.