Schema for mrnaOrientInfo
  Database: droEre1    Primary Table: mrnaOrientInfo    Row Count: 65   Data last updated: 2017-10-16
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_1287varchar(255) values Reference sequence chromosome or scaffold
chromStart 707int(10) unsigned range Start position in chromosome
chromEnd 1418int(10) unsigned range End position in chromosome
name EU362867varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        droEre1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_12877071418EU36286701000
585scaffold_313864716731EU5953960230430
585scaffold_31561166811863EU4174500110240
585scaffold_31561166811863EU4174510110240
585scaffold_327629783181EU4174501110240
585scaffold_33279203504EU51446912000
585scaffold_33861791194EU4174500110240
585scaffold_34348312283286EU68528002000
585scaffold_3451891710766EU4174501110240
585scaffold_348702651EU4174501110240

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.