Schema for all_mrna
  Database: droSim1    Primary Table: all_mrna    Row Count: 389   Data last updated: 2018-07-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 612smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 333int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 61int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName FJ460571varchar(255) values Query sequence name
qSize 335int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 335int(10) unsigned range Alignment end position in query
tName chr2Lvarchar(255) values Target sequence name
tSize 22036055int(10) unsigned range Target sequence size
tStart 3651394int(10) unsigned range Alignment start position in target
tEnd 3651790int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 216,119,longblob   Size of each block
qStarts 0,216,longblob   Start of each block in query.
tStarts 3651394,3651671,longblob   Start of each block in target.

Connected Tables and Joining Fields
        droSim1.all_est.qName (via all_mrna.qName)
      droSim1.mrnaOrientInfo.name (via all_mrna.qName)
      droSim1.xenoMrna.qName (via all_mrna.qName)
      droSim1.xenoRefGene.name (via all_mrna.qName)
      droSim1.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
61233320000161-FJ4605713350335chr2L22036055365139436517902216,119,0,216,3651394,3651671,
62310742300004216-DQ088699111521099chr2L22036055501236650136795206,169,578,103,41,16,222,391,969,1072,5012366,5012625,5012856,5013486,5013638,
7830200017626016-DQ0627713780378chr2L2203605557615815767899397,94,111,0,173,267,5761581,5765071,5767788,
6361256700001265+DQ062785126301263chr2L22036055671947367210012495,768,0,495,6719473,6720233,
639134912001222+DQ778984137601363chr2L22036055711022271115854192,281,40,848,0,194,475,515,7110222,7110414,7110696,7110737,
6467831300002114-DQ0886968120796chr2L22036055802485480257643180,139,477,16,196,335,8024854,8025090,8025287,
6551377500003798-AM114002138201382chr2L22036055920518692073664548,178,407,249,0,548,726,1133,9205186,9205795,9206437,9207117,
661587400002114-DQ0628075910591chr2L22036055998155199822563402,66,123,0,402,468,9981551,9982006,9982133,
667246927060072340-JX656836250202502chr2L2203605510779583107844258883,111,192,201,155,321,585,54,0,883,994,1186,1387,1542,1863,2448,10779583,10780590,10780820,10781063,10781970,10782179,10782556,10784371,
6672460280170072340-JX656833250502505chr2L2203605510779583107844288883,111,192,199,157,321,585,57,0,883,994,1186,1385,1542,1863,2448,10779583,10780590,10780820,10781063,10781968,10782179,10782556,10784371,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.