Schema for intronEst
  Database: droVir2    Primary Table: intronEst    Row Count: 15,604   Data last updated: 2016-03-29
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 440int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 67int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName CX159220varchar(255) values Query sequence name
qSize 441int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 441int(10) unsigned range Alignment end position in query
tName scaffold_10322varchar(255) values Target sequence name
tSize 456894int(10) unsigned range Target sequence size
tStart 60961int(10) unsigned range Alignment start position in target
tEnd 61468int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 51,270,119,longblob   Size of each block
qStarts 0,52,322,longblob   Start of each block in query.
tStarts 60961,61012,61349,longblob   Start of each block in target.

Connected Tables and Joining Fields
        droVir2.all_est.qName (via intronEst.qName)
      droVir2.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58544000011167-CX1592204410441scaffold_103224568946096161468351,270,119,0,52,322,60961,61012,61349,
5876970000021512-CX1596026970697scaffold_103224568943809923832013417,209,71,0,417,626,380992,382920,383130,
5876612001131513-CX1595936640664scaffold_10322456894381025383201572,4,307,209,71,0,72,77,384,593,381025,381098,381102,382920,383130,
585595901002240-CX1595556050605scaffold_124207302107519203142,354,109,0,142,496,1075,1276,1811,
589518100002214+CX1593295190519scaffold_127235800522611014611747310,76,433,0,10,86,611014,611175,611314,
589619200112214+CX1596106260622scaffold_127235800522611014611849410,76,523,12,0,10,86,610,611014,611175,611314,611837,
602653300001237+CX1593736560656scaffold_12723580052223204632321356235,621,0,35,2320463,2320735,
6047151001144130-CX1596137170717scaffold_12723580052224932162498062670,27,4,542,66,7,0,70,97,102,644,710,2493216,2496712,2496740,2496744,2497693,2498055,
6046920000034129-CX1594886920692scaffold_12723580052224932412498062445,574,66,7,0,45,619,685,2493241,2496712,2497693,2498055,
604614000002703-CX1593716140614scaffold_127235800522249674524980623541,66,7,0,541,607,2496745,2497693,2498055,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.