Schema for estOrientInfo
  Database: equCab2    Primary Table: estOrientInfo    Row Count: 38,091   Data last updated: 2016-05-09
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 640smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 7286606int(10) unsigned range Start position in chromosome
chromEnd 7296671int(10) unsigned range End position in chromosome
name AB096934varchar(255) values Accession of EST
intronOrientation -3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        equCab2.all_est.qName (via estOrientInfo.name)
      equCab2.est.qName (via estOrientInfo.name)
      equCab2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
640chr172866067296671AB096934-30000
814chr203008670030088084AB086363-30000
743chr242080449320833414AB09693320000
1176chr37746679777471946AB08635812000
1101chr66771258867712719AB08635900000
1211chr78213588382140030AB53732840000
1211chr78213588382140030AB53732930000
790chr12693297526938429AW26093430000
809chr12943300229433493AW26091100000
809chr12943304429433747AW26105902000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.