Schema for mrnaOrientInfo
  Database: equCab2    Primary Table: mrnaOrientInfo    Row Count: 31,528   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 29299int(10) unsigned range Start position in chromosome
chromEnd 29846int(10) unsigned range End position in chromosome
name JL627889varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        equCab2.all_mrna.qName (via mrnaOrientInfo.name)
      equCab2.refFlat.name (via mrnaOrientInfo.name)
      equCab2.refGene.name (via mrnaOrientInfo.name)
      equCab2.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr12929929846JL62788900000
585chr16551866273JL61824300000
585chr16708067279JL62047800000
586chr1132226143850EU232117700220
588chr1514193514479JL63342400000
598chr118133021819336JL624754400110
598chr118157171815986JL63729600000
598chr118288611829428JL62832300000
611chr134241843450283JL616070900150
611chr134540753454448JL62674500000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.