Schema for xenoMrna
  Database: felCat8    Primary Table: xenoMrna    Row Count: 4,997,750   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 77int(10) unsigned Number of bases that match that aren't repeats
misMatches 7int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 3int(10) unsigned Number of inserts in query
qBaseInsert 56int(10) unsigned Number of bases inserted in query
tNumInsert 3int(10) unsigned Number of inserts in target
tBaseInsert 93562int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JT861017varchar(255) Query sequence name
qSize 326int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 140int(10) unsigned Alignment end position in query
tName chrA1varchar(255) Target sequence name
tSize 240380223int(10) unsigned Target sequence size
tStart 5404int(10) unsigned Alignment start position in target
tEnd 99050int(10) unsigned Alignment end position in target
blockCount 4int(10) unsigned Number of blocks in alignment
blockSizes 30,21,18,15,longblob Size of each block
qStarts 0,70,101,125,longblob Start of each block in query.
tStarts 240281173,240370451,2403744...longblob Start of each block in target.

Connected Tables and Joining Fields
        felCat8.all_est.qName (via xenoMrna.qName)
      felCat8.all_mrna.qName (via xenoMrna.qName)
      felCat8.refGene.name (via xenoMrna.qName)
      felCat8.refSeqAli.qName (via xenoMrna.qName)
      felCat8.xenoRefFlat.name (via xenoMrna.qName)
      felCat8.xenoRefGene.name (via xenoMrna.qName)
      felCat8.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58577700356393562+-JT8610173260140chrA1240380223540499050430,21,18,15,0,70,101,125,240281173,240370451,240374488,240374804,
585685002335694+-JR443087260121197chrA1240380223540511172427,19,12,15,121,149,168,182,240369051,240369652,240370460,240374803,
585161100031061291209+-JL1798723524281chrA12403802235405967851318,16,10,12,15,19,11,19,2,16,15,3,15,4,54,70,80,152,167,186,197,216,218,248,263,266,240283438,240283573,240284441,240368448,240368489,240368807,240370169,240371609,240371982,240372298,240372583,240373471,24037480 ...
5851361400291893500+-JU2932452804245chrA1240380223540599055920,29,6,27,15,4,16,15,18,4,24,53,59,139,154,158,174,227,240281168,240370153,240370269,240370454,240370574,240370612,240371459,240374492,240374800,
5858650000493560+-JI31716824720111chrA1240380223540599056539,6,14,19,13,20,59,65,79,98,240281167,240281351,240368998,240374488,240374805,
585606001162193530++JT16588226126254chrA1240380223546099056227,39,26,215,5460,99017,
5851261400235693451+-JT490456337106281chrA1240380223546499055735,25,13,17,18,12,20,106,141,190,203,220,249,261,240281168,240281578,240283195,240369480,240371380,240372103,240374739,
585862800224825209+-JU53962144684446chrA1240380223546510788348,21,45,84,323,401,240369435,240369823,240374713,
58514732005258791066+-JU62950253867504chrA1240380223546596710830,49,17,15,21,17,9,21,67,190,239,289,317,407,424,483,240283513,240284624,240369060,240371983,240372487,240374520,240374706,240374737,
5851131000148693462+-JT2626882953174chrA1240380223546599050728,9,14,30,2,16,24,3,31,40,54,84,86,150,240281173,240369064,240370229,240370451,240370562,240370573,240374734,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.