Schema for all_est
  Database: felCat9    Primary Table: all_est    Row Count: 1,052   Data last updated: 2018-03-17
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 902smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 553int(10) unsigned range Number of bases that match that aren't repeats
misMatches 11int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 2int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 11int(10) unsigned range Number of inserts in target
tBaseInsert 648int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AF034791varchar(255) values Query sequence name
qSize 1367int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 566int(10) unsigned range Alignment end position in query
tName chrB4varchar(255) values Target sequence name
tSize 144528695int(10) unsigned range Target sequence size
tStart 41632231int(10) unsigned range Alignment start position in target
tEnd 41633445int(10) unsigned range Alignment end position in target
blockCount 12int(10) unsigned range Number of blocks in alignment
blockSizes 23,107,84,6,116,82,44,41,19...longblob   Size of each block
qStarts 0,23,130,214,220,336,418,46...longblob   Start of each block in query.
tStarts 41632231,41632337,41632566,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        felCat9.all_mrna.qName (via all_est.qName)
      felCat9.estOrientInfo.name (via all_est.qName)
      felCat9.intronEst.qName (via all_est.qName)
      felCat9.refGene.name (via all_est.qName)
      felCat9.refSeqAli.qName (via all_est.qName)
      felCat9.xenoMrna.qName (via all_est.qName)
      felCat9.xenoRefGene.name (via all_est.qName)
      felCat9.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
90255311020011648+AF03479113670566chrB414452869541632231416334451223,107,84,6,116,82,44,41,19,4,23,17,0,23,130,214,220,336,418,462,503,522,526,549,41632231,41632337,41632566,41632651,41632766,41632984,41633292,41633337,41633379,41633399,41633404,41633428,
8648823000076760+AF1979708910885chrX1305570093658147636589121867,89,157,213,28,66,245,20,0,67,156,313,526,554,620,865,36581476,36581633,36585267,36585574,36586124,36586154,36588563,36589101,
134452001111+AF1979694590448chrX13055700936699842367002903155,268,24,0,156,424,36699842,36699997,36700266,
6313830000011+AW6469393830383chrA1242100913608356760839512165,218,0,165,6083567,6083733,
6544273032233-AW6467554350435chrA124210091391214229121858616,264,35,47,33,38,0,16,280,315,363,397,9121422,9121439,9121704,9121740,9121787,9121820,
8065912010057994+AW6469245940594chrA12421009132900327029011858665,65,126,110,155,73,0,65,130,256,366,521,29003270,29004278,29004773,29006053,29006991,29011785,
9544861003300-AW6467544900490chrA124210091348377851483783384388,31,13,55,0,389,421,435,48377851,48378239,48378270,48378283,
9763044021111+AW6467533110311chrA12421009135125631851256629343,105,162,0,44,149,51256318,51256361,51256467,
12305051020054349-AW6467665080508chrA12421009138461818584623042648,100,115,79,78,88,0,48,148,263,342,420,84618185,84618354,84621057,84622609,84622789,84622954,
1284318603002774+AW6467653281328chrA124210091391639023916401243108,111,108,1,109,220,91639023,91639515,91640016,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.