Schema for all_est
  Database: fr1    Primary Table: all_est    Row Count: 344,581   Data last updated: 2019-03-08
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 128int(10) unsigned range Number of bases that match that aren't repeats
misMatches 6int(10) unsigned range Number of bases that don't match
repMatches 218int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 186int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AL839945varchar(255) values Query sequence name
qSize 360int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 352int(10) unsigned range Alignment end position in query
tName chrUnvarchar(255) values Target sequence name
tSize 349519338int(10) unsigned range Target sequence size
tStart 228608int(10) unsigned range Alignment start position in target
tEnd 229146int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 143,176,33,longblob   Size of each block
qStarts 0,143,319,longblob   Start of each block in query.
tStarts 228608,228752,229113,longblob   Start of each block in target.

Connected Tables and Joining Fields
        fr1.all_mrna.qName (via all_est.qName)
      fr1.est.qName (via all_est.qName)
      fr1.estOrientInfo.name (via all_est.qName)
      fr1.intronEst.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58612862180002186+AL8399453600352chrUn3495193382286082291463143,176,33,0,143,319,228608,228752,229113,
5881430000000-AL8354652070143chrUn3495193384226834228261143,64,422683,
589355300113614+AL8370333590359chrUn3495193386025976035695100,54,123,35,46,0,100,154,277,313,602597,602985,603246,603488,603523,
591953000000-AL842404358098chrUn349519338793055793153198,260,793055,
5914183000041004+AL8368934520421chrUn349519338831688833113577,95,100,54,95,0,77,172,272,326,831688,831844,832074,832880,833018,
5913687003341004+AL8353473780378chrUn349519338831689833068876,95,51,32,17,54,34,16,0,76,171,223,256,273,327,362,831689,831844,832074,832125,832157,832880,833018,833052,
5913941001141004+AL8423213960396chrUn349519338831696833095669,95,100,54,54,23,0,69,164,264,318,373,831696,831844,832074,832880,833018,833072,
591208000002790+AL8363022790208chrUn349519338832115833113359,54,95,0,59,113,832115,832880,833018,
5913302001178+AL8379243330333chrUn349519338845655845995846,16,13,15,43,28,37,134,0,46,62,75,90,133,161,199,845655,845702,845719,845733,845749,845793,845822,845861,
591300500001126-AL8390803094309chrUn3495193388502558506862229,76,0,229,850255,850610,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.