Schema for xenoMrna
  Database: galGal4    Primary Table: xenoMrna    Row Count: 4,405,141   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 393int(10) unsigned Number of bases that match that aren't repeats
misMatches 85int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 91int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 4312int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName JT481317varchar(255) Query sequence name
qSize 1722int(10) unsigned Query sequence size
qStart 952int(10) unsigned Alignment start position in query
qEnd 1521int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 195276750int(10) unsigned Target sequence size
tStart 31161int(10) unsigned Alignment start position in target
tEnd 35951int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 128,151,199,longblob Size of each block
qStarts 952,1171,1322,longblob Start of each block in query.
tStarts 31161,34361,35752,longblob Start of each block in target.

Connected Tables and Joining Fields
        galGal4.all_est.qName (via xenoMrna.qName)
      galGal4.all_mrna.qName (via xenoMrna.qName)
      galGal4.refGene.name (via xenoMrna.qName)
      galGal4.refSeqAli.qName (via xenoMrna.qName)
      galGal4.xenoRefFlat.name (via xenoMrna.qName)
      galGal4.xenoRefGene.name (via xenoMrna.qName)
      galGal4.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585393850019124312++JT48131717229521521chr119527675031161359513128,151,199,952,1171,1322,31161,34361,35752,
585304670019124312+-CR6815391140169631chr11952767503116235845393,152,126,169,262,505,195240905,195242238,195245462,
585343640019124312+-CR6948641006114612chr119527675031162358813129,152,126,114,243,486,195240869,195242238,195245462,
585372710019124312+-CR701179109172606chr119527675031162359173165,152,126,72,237,480,195240833,195242238,195245462,
585340630019334356+-CR6824959130496chr11952767503116235921484,84,109,126,0,84,168,370,195240829,195240914,195242279,195245462,
585384680019124312+-CR681952102398641chr119527675031162359263174,152,126,98,272,515,195240824,195242238,195245462,
585387700019124312+-CR687211102888636chr119527675031162359313179,152,126,88,267,510,195240819,195242238,195245462,
585386780019124312+-CR694580108653608chr119527675031162359383186,152,126,53,239,482,195240812,195242238,195245462,
585387770019124312+-CR695218115182637chr119527675031162359383186,152,126,82,268,511,195240812,195242238,195245462,
585389810019124312+-CR682107110250611chr119527675031162359443192,152,126,50,242,485,195240806,195242238,195245462,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.