Schema for mrnaOrientInfo
  Database: gorGor3    Primary Table: mrnaOrientInfo    Row Count: 421   Data last updated: 2019-09-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 645smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 7959982int(10) unsigned range Start position in chromosome
chromEnd 7960224int(10) unsigned range End position in chromosome
name AY827149varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        gorGor3.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
645chr179599827960224AY82714901000
645chr179599827960224AY82715001000
784chr12617188726210682L3705261000
784chr12617188726210682L3705361000
785chr12625792826312695L3705240000
785chr12625792826312695L3705340000
785chr12626623626285079AF20136920000
892chr14033298340334997DQ88566110000
1018chr15677598456801472EF692498110000
1655chr1140295499140306613DQ885670130000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.