Schema for intronEst
  Database: hg16    Primary Table: intronEst (chr1_intronEst)    Row Count: 387,069   Data last updated: 2016-05-07
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 442int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 7int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 140int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AA478024varchar(255) values Query sequence name
qSize 451int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 451int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 246127941int(10) unsigned range Target sequence size
tStart 4264int(10) unsigned range Alignment start position in target
tEnd 4848int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 58,270,24,76,16,longblob   Size of each block
qStarts 0,63,334,359,435,longblob   Start of each block in query.
tStarts 4264,4322,4592,4616,4832,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hg16.all_est.qName (via intronEst.qName)
      hg16.altGraphX.mrnaRefs (via intronEst.qName)
      hg16.est.qName (via intronEst.qName)
      hg16.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585442200371140+AA4780244510451chr124612794142644848558,270,24,76,16,0,63,334,359,435,4264,4322,4592,4616,4832,
585451200151140+AA27913947113471chr124612794142664859356,370,27,13,74,444,4266,4322,4832,
58546810012893158+AA8539416051569chr124612794142664903552,55,16,285,71,1,58,197,213,498,4266,4318,4390,4407,4832,
585468400151140+AA5650144770477chr124612794142674879355,370,47,0,60,430,4267,4322,4832,
585324700004899-AA5525813376337chr1246127941451757475129,45,69,50,38,0,129,174,243,293,4517,4647,4832,5658,5709,
5852995330127756-AA4781813390339chr124612794157716864839,11,92,54,51,15,41,34,0,39,50,144,198,249,264,305,5771,6469,6481,6574,6720,6772,6788,6830,
5854124000021199+AA9345834226422chr1246127941630479193188,86,142,6,194,280,6304,7519,7777,
5853751370004267-AA2784124130413chr1246127941648171615150,52,11,134,66,0,150,202,213,347,6481,6719,6772,6784,7095,
58534383002143269-AA4342033950395chr124612794165117161580,19,17,199,66,0,93,113,130,329,6511,6595,6614,6719,7095,
5859104000394-AA29182695095chr124612794166086797420,53,13,9,0,20,73,86,6608,6720,6774,6788,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.