Schema for mgcFullMrna
  Database: hg16    Primary Table: mgcFullMrna    Row Count: 31,102   Data last updated: 2020-01-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 588smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 995int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName BC137547varchar(255) values Query sequence name
qSize 995int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 995int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 246127941int(10) unsigned range Target sequence size
tStart 407502int(10) unsigned range Alignment start position in target
tEnd 408497int(10) unsigned range Alignment end position in target
blockCount 1int(10) unsigned range Number of blocks in alignment
blockSizes 995,longblob   Size of each block
qStarts 0,longblob   Start of each block in query.
tStarts 407502,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hg16.all_mrna.qName (via mgcFullMrna.qName)
      hg16.altGraphX.mrnaRefs (via mgcFullMrna.qName)
      hg16.dupSpMrna.dupMrnaID (via mgcFullMrna.qName)
      hg16.dupSpMrna.mrnaID (via mgcFullMrna.qName)
      hg16.mgcGenes.name (via mgcFullMrna.qName)
      hg16.mrnaOrientInfo.name (via mgcFullMrna.qName)
      hg16.mrnaRefseq.mrna (via mgcFullMrna.qName)
      hg16.spMrna.mrnaID (via mgcFullMrna.qName)
      hgFixed.gbCdnaInfo.acc (via mgcFullMrna.qName)
      hgFixed.gbSeq.acc (via mgcFullMrna.qName)
      hgFixed.imageClone.acc (via mgcFullMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5889950000000+BC1375479950995chr12461279414075024084971995,0,407502,
5889941000000+BC1375689950995chr12461279414075024084971995,0,407502,
5909950000000-BC1375479950995chr12461279416609216619161995,0,660921,
5909941000000-BC1375689950995chr12461279416609216619161995,0,660921,
59219264000088322-BC008788197901930chr124612794192326293351491163,154,60,135,66,96,76,94,86,49,1212,1366,1426,1561,1627,1723,1799,1893,923262,925790,926688,927315,928576,928939,931790,932909,933428,
59217970000084054+BC126152179701797chr1246127941102116710270189124,307,119,130,75,86,172,172,612,0,124,431,550,680,755,841,1013,1185,1021167,1021471,1021920,1022168,1023178,1023798,1024313,1025357,1026406,
59217970000084054+BC126154179701797chr1246127941102116710270189124,307,119,130,75,86,172,172,612,0,124,431,550,680,755,841,1013,1185,1021167,1021471,1021920,1022168,1023178,1023798,1024313,1025357,1026406,
5927680000032213-BC15696482933801chr1246127941104502910480104369,88,123,188,28,397,485,608,1045029,1045836,1046807,1047822,
5927670000032213-BC15610282933800chr1246127941104503010480104368,88,123,188,29,397,485,608,1045030,1045836,1046807,1047822,
5927250000042002-BC1523817302727chr1246127941104528310480105123,203,88,123,188,3,126,329,417,540,1045283,1045471,1045836,1046807,1047822,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.