Schema for HInvGeneMrna
  Database: hg17    Primary Table: HInvGeneMrna    Row Count: 44,811   Data last updated: 2004-07-28
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1973int(10) unsigned range Number of bases that match that aren't repeats
misMatches 21int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 3int(10) unsigned range Number of bases inserted in query
tNumInsert 9int(10) unsigned range Number of inserts in target
tBaseInsert 12990int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName HIT000020038varchar(255) values Query sequence name
qSize 1997int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 1997int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 245522847int(10) unsigned range Target sequence size
tStart 4222int(10) unsigned range Alignment start position in target
tEnd 19206int(10) unsigned range Alignment end position in target
blockCount 12int(10) unsigned range Number of blocks in alignment
blockSizes 470,69,108,44,162,199,260,2...longblob   Size of each block
qStarts 0,470,539,648,692,854,1053,...longblob   Start of each block in query.
tStarts 4222,4832,5658,5766,6469,67...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hg17.HInv.geneId (via HInvGeneMrna.qName)
      hg17.knownToHInv.value (via HInvGeneMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5851973210023912990-HIT000020038199701997chr124552284742221920612470,69,108,44,162,199,260,259,147,99,154,23,0,470,539,648,692,854,1053,1315,1574,1721,1820,1974,4222,4832,5658,5766,6469,6719,7095,7355,7777,8130,14600,19183,
58534474100411911592-HIT000026002353603499chr124552284742661934614108,316,271,303,360,198,661,198,260,250,147,99,154,163,37,145,461,738,1043,1404,1602,2263,2461,2723,2973,3120,3219,3373,4266,4376,4832,5103,5406,5766,5967,6720,7095,7355,7777,8130,14600,19183,
5854213210012293-HIT000007755423604236chr12455228474269859631499,859,1876,0,1501,2360,4269,5769,6720,
5853135190027711784-HIT000017450316103161chr1245522847426919207953,1446,859,198,136,137,147,154,24,0,58,1506,2365,2563,2699,2836,2983,3137,4269,4322,5769,6720,7095,7468,7777,14600,19183,
5851659210022741013259-HIT000014558195401954chr124552284742691920812423,69,108,44,162,199,136,140,121,99,154,25,0,423,492,601,645,807,1006,1142,1555,1676,1775,1929,4269,4832,5658,5766,6469,6719,7095,7468,7803,8130,14600,19183,
58523341300271213247-HIT000012846235402354chr12455228474269198631449,374,69,110,41,162,199,136,137,147,99,154,582,88,0,54,428,497,609,650,812,1011,1147,1284,1431,1530,1684,2266,4269,4318,4832,5658,5769,6469,6719,7095,7468,7777,8130,14600,19183,19775,
5852802000026577-HIT0000145581954391673chr1245522847789814757326,99,157,1281,1307,1406,7898,8130,14600,
585438121000014429-HIT000007722440404402chr1245522847103691920024385,17,2,4387,10369,19183,
5851860270000315-HIT000012176188901887chr124552284793495953974528,146,1165,48,2,530,676,1841,93495,94025,94183,95349,
58523376800395105-HIT000021935242062420chr124552284712463612714681798,76,45,97,161,184,37,7,0,1798,1874,1920,2017,2178,2369,2407,124636,126483,126560,126605,126703,126912,127102,127139,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.