Schema for wgEncodeGencodeAttrsV28lift37
  Database: hg19    Primary Table: wgEncodeGencodeAttrsV28lift37    Row Count: 206,058   Data last updated: 2018-04-17
On download server: MariaDB table dump directory
fieldexampleSQL type info
geneId ENSG00000223972.5_2varchar(255) values
geneName DDX11L1varchar(255) values
geneType transcribed_unprocessed_pse...varchar(255) values
geneStatus  varchar(255) values
transcriptId ENST00000456328.2_1varchar(255) values
transcriptName RP11-34P13.1-002varchar(255) values
transcriptType processed_transcriptvarchar(255) values
transcriptStatus  varchar(255) values
havanaGeneId OTTHUMG00000000961.2_2varchar(255) values
havanaTranscriptId OTTHUMT00000362751.1_1varchar(255) values
ccdsId  varchar(255) values
level 2int(11) range
transcriptClass pseudovarchar(255) values
proteinId  varchar(255) values

Connected Tables and Joining Fields
        hg19.wgEncodeGencodeGeneSourceV28lift37.geneId (via wgEncodeGencodeAttrsV28lift37.geneId)
      hg19.wgEncodeGencodeAnnotationRemarkV28lift37.transcriptId (via wgEncodeGencodeAttrsV28lift37.transcriptId)
      hg19.wgEncodeGencodeBasicV28lift37.name (via wgEncodeGencodeAttrsV28lift37.transcriptId)
      hg19.wgEncodeGencodeCompV28lift37.name (via wgEncodeGencodeAttrsV28lift37.transcriptId)
      hg19.wgEncodeGencodePdbV28lift37.transcriptId (via wgEncodeGencodeAttrsV28lift37.transcriptId)
      hg19.wgEncodeGencodePseudoGeneV28lift37.name (via wgEncodeGencodeAttrsV28lift37.transcriptId)
      hg19.wgEncodeGencodePubMedV28lift37.transcriptId (via wgEncodeGencodeAttrsV28lift37.transcriptId)
      hg19.wgEncodeGencodeRefSeqV28lift37.transcriptId (via wgEncodeGencodeAttrsV28lift37.transcriptId)
      hg19.wgEncodeGencodeTagV28lift37.transcriptId (via wgEncodeGencodeAttrsV28lift37.transcriptId)
      hg19.wgEncodeGencodeTranscriptSourceV28lift37.transcriptId (via wgEncodeGencodeAttrsV28lift37.transcriptId)
      hg19.wgEncodeGencodeTranscriptSupportV28lift37.transcriptId (via wgEncodeGencodeAttrsV28lift37.transcriptId)
      hg19.wgEncodeGencodeTranscriptionSupportLevelV28lift37.transcriptId (via wgEncodeGencodeAttrsV28lift37.transcriptId)
      hg19.wgEncodeGencodeUniProtV28lift37.transcriptId (via wgEncodeGencodeAttrsV28lift37.transcriptId)

Sample Rows
 
geneIdgeneNamegeneTypegeneStatustranscriptIdtranscriptNametranscriptTypetranscriptStatushavanaGeneIdhavanaTranscriptIdccdsIdleveltranscriptClassproteinId
ENSG00000223972.5_2DDX11L1transcribed_unprocessed_pseudogeneENST00000456328.2_1RP11-34P13.1-002processed_transcriptOTTHUMG00000000961.2_2OTTHUMT00000362751.1_12pseudo
ENSG00000223972.5_2DDX11L1transcribed_unprocessed_pseudogeneENST00000450305.2_1RP11-34P13.1-001transcribed_unprocessed_pseudogeneOTTHUMG00000000961.2_2OTTHUMT00000002844.2_12pseudo
ENSG00000227232.5_2WASH7Punprocessed_pseudogeneENST00000488147.1_1RP11-34P13.2-001unprocessed_pseudogeneOTTHUMG00000000958.1_2OTTHUMT00000002839.1_12pseudo
ENSG00000243485.5_4RP11-34P13.3lincRNAENST00000473358.1_1RP11-34P13.3-001lincRNAOTTHUMG00000000959.2_4OTTHUMT00000002840.1_12nonCoding
ENSG00000243485.5_4RP11-34P13.3lincRNAENST00000469289.1_1RP11-34P13.3-002lincRNAOTTHUMG00000000959.2_4OTTHUMT00000002841.2_12nonCoding
ENSG00000237613.2_2FAM138AlincRNAENST00000417324.1_1RP11-34P13.4-001lincRNAOTTHUMG00000000960.1_2OTTHUMT00000002842.1_12nonCoding
ENSG00000237613.2_2FAM138AlincRNAENST00000461467.1_1RP11-34P13.4-002lincRNAOTTHUMG00000000960.1_2OTTHUMT00000002843.1_12nonCoding
ENSG00000268020.3_4OR4G4Punprocessed_pseudogeneENST00000606857.1_1RP11-34P13.17-001unprocessed_pseudogeneOTTHUMG00000185779.1_4OTTHUMT00000471235.1_12pseudo
ENSG00000240361.2_3OR4G11Ptranscribed_unprocessed_pseudogeneENST00000642116.1_1RP11-34P13.6-002processed_transcriptOTTHUMG00000001095.3_3OTTHUMT00000492680.1_12pseudo
ENSG00000240361.2_3OR4G11Ptranscribed_unprocessed_pseudogeneENST00000492842.2_2RP11-34P13.6-001transcribed_unprocessed_pseudogeneOTTHUMG00000001095.3_3OTTHUMT00000003224.3_22pseudo

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.