Schema for xenoRefFlat
  Database: hg19    Primary Table: xenoRefFlat    Row Count: 183,060   Data last updated: 2020-08-17
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName GTF2H4varchar(255) values Name of gene as it appears in genome browser.
name NM_001123120varchar(255) values Name of gene
chrom chr6_qbl_hap6varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 2169819int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 2174745int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 2169819int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 2174745int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 13int(10) unsigned range Number of exons
exonStarts 2169819,2170196,2170693,217...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 2169935,2170301,2170825,217...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hg19.xenoMrna.qName (via xenoRefFlat.name)
      hg19.xenoRefGene.name (via xenoRefFlat.name)
      hg19.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
GTF2H4NM_001123120chr6_qbl_hap6+2169819217474521698192174745132169819,2170196,2170693,2171426,2171614,2171919,2172192,2172445,2172775,2173089,2173871,2174070,2174570,2169935,2170301,2170825,2171523,2171703,2172031,2172261,2172529,2172908,2173220,2173919,2174147,2174745,
GPR4NM_001123118chr19-46094044460951244609404446095124346094044,46094078,46094113,46094076,46094106,46095124,
zbtb12.2NM_001044884chr6_cox_hap2-337749233788243377492337882433377492,3378461,3378719,3377756,3378707,3378824,
zbtb12.2NM_001044884chr6_dbb_hap3-315332031546523153320315465233153320,3154289,3154547,3153584,3154535,3154652,
Gm36176NM_001370835chr21+46066374461176594606637546117641446066374,46066447,46117347,46117525,46066447,46066552,46117495,46117659,
MIR196BNR_162073chr7-27209110272091682720916827209168127209110,27209168,
mir551bNR_161936chr3+1682696641682697281682697281682697281168269664,168269728,
CIDEANM_001083449chr18+12262813122876071226281312277221612262813,12264305,12274086,12277118,12279346,12287538,12262968,12264447,12274270,12277221,12279404,12287607,
LRCH4NM_001083450chr7-10017176210018375210017187410018372320100171762,100171818,100173327,100173493,100173857,100174316,100174551,100174898,100175119,100175286,100175444,100175781,10017602 ...100171786,100171979,100173405,100173628,100173946,100174404,100174626,100175012,100175181,100175363,100175535,100175888,10017607 ...
Olr752NM_001000367chr1+52451638275245163827252451,63105,52608,63827,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.