Schema for all_mrna
  Database: latCha1    Primary Table: all_mrna    Row Count: 78   Data last updated: 2016-05-04
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 595smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1078int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 2int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 7int(10) unsigned range Number of inserts in target
tBaseInsert 10054int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AY005154varchar(255) values Query sequence name
qSize 1092int(10) unsigned range Query sequence size
qStart 12int(10) unsigned range Alignment start position in query
qEnd 1092int(10) unsigned range Alignment end position in query
tName JH126562varchar(255) values Target sequence name
tSize 10736886int(10) unsigned range Target sequence size
tStart 1354048int(10) unsigned range Alignment start position in target
tEnd 1365182int(10) unsigned range Alignment end position in target
blockCount 8int(10) unsigned range Number of blocks in alignment
blockSizes 96,59,70,134,223,198,202,98,longblob   Size of each block
qStarts 12,108,167,237,371,594,792,...longblob   Start of each block in query.
tStarts 1354048,1357810,1359515,136...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      latCha1.mrnaOrientInfo.name (via all_mrna.qName)
      latCha1.xenoMrna.qName (via all_mrna.qName)
      latCha1.xenoRefGene.name (via all_mrna.qName)
      latCha1.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
595107800200710054+AY0051541092121092JH1265621073688613540481365182896,59,70,134,223,198,202,98,12,108,167,237,371,594,792,994,1354048,1357810,1359515,1361220,1361450,1362765,1363925,1365084,
62098521900059016-AY389891100601006JH126569657387646276884637710666,269,165,180,185,141,0,66,335,500,680,865,4627688,4628474,4633811,4634162,4635136,4637569,
60969327000054323+AY3899437690765JH126570607747432298273234915625,176,88,147,186,143,0,25,201,289,436,622,3229827,3230930,3231804,3233024,3233667,3234772,
60769131000077732+AY3899417040704JH126573553746329136082922044889,137,12,141,80,131,70,44,0,89,226,238,379,459,590,660,2913608,2914350,2914488,2915972,2918151,2919966,2920371,2922000,
94541400036402-AY3899054590459JH1265804642039209490721017684109,126,147,77,0,109,235,382,2094907,2096973,2097897,2101691,
6172510010031892-KF6012162530252JH126580464203943185054320649477,58,78,39,1,78,136,214,4318505,4320248,4320393,4320610,
59544511000035756+AY3899235980456JH126587396386914262901432502451,81,149,175,0,51,132,281,1426290,1428352,1428901,1432327,
5884590100035504+AY3899254600460JH12659237399575120355179994125,107,132,96,0,125,232,364,512035,513306,515521,517903,
59310061849622913245+AY389901109001081JH12659337295731083034109735812100,64,143,144,130,151,44,6,173,33,8,83,0,100,164,307,451,581,732,777,783,956,990,998,1083034,1083399,1084457,1086004,1087697,1088400,1088552,1088596,1096379,1097233,1097266,1097275,
59489255000711735-AY3899079020902JH126602331197711824551195092839,111,141,111,96,148,172,84,0,39,150,291,402,498,646,818,1182455,1183071,1185174,1186307,1188184,1190281,1193174,1195008,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.