Schema for mrnaOrientInfo
  Database: loxAfr3    Primary Table: mrnaOrientInfo    Row Count: 56   Data last updated: 2019-06-29
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 842smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_10varchar(255) values Reference sequence chromosome or scaffold
chromStart 33746019int(10) unsigned range Start position in chromosome
chromEnd 33749441int(10) unsigned range End position in chromosome
name JN966756varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 15smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      loxAfr3.all_mrna.qName (via mrnaOrientInfo.name)
      loxAfr3.refFlat.name (via mrnaOrientInfo.name)
      loxAfr3.refGene.name (via mrnaOrientInfo.name)
      loxAfr3.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
842scaffold_103374601933749441JN966756300150
603scaffold_11624874182488762FJ71609020000
603scaffold_11624874182488762FJ71609120000
746scaffold_122113580121137050EF52420400000
842scaffold_123370227733708527AY686752417000
599scaffold_12018730331884518AY686754434000
585scaffold_13113496114921HQ14111800000
733scaffold_151947321719473463GU16628700000
976scaffold_155137765151379032DQ40304760000
589scaffold_169616617639098DQ402972110000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.