Schema for estOrientInfo
  Database: macFas5    Primary Table: estOrientInfo    Row Count: 172,829   Data last updated: 2016-03-30
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1819smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 161748599int(10) unsigned range Start position in chromosome
chromEnd 161762540int(10) unsigned range End position in chromosome
name AB471890varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      macFas5.all_est.qName (via estOrientInfo.name)
      macFas5.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1819chr1161748599161762540AB47189030000
1819chr1161748599161762540AB47189140000
602chr122634452264122BB874773000014
602chr122634692263781BB87421600100
604chr125334712535161BB875595-10006
606chr127952842804209BB886550-10000
606chr127952932804205BB877489-10000
619chr145736324574160BB90125401000
622chr149114554912326BB89482800000
622chr149152514915853BB88656100000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.