Schema for xenoRefFlat
  Database: macFas5    Primary Table: xenoRefFlat    Row Count: 338,383   Data last updated: 2020-08-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName vtnavarchar(255) values Name of gene as it appears in genome browser.
name NM_001020672varchar(255) values Name of gene
chrom chr16varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 24587884int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 24591960int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 24589361int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 24591960int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 4int(10) unsigned range Number of exons
exonStarts 24587884,24589361,24591253,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 24587899,24589454,24591394,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      macFas5.xenoRefGene.name (via xenoRefFlat.name)
      macFas5.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
vtnaNM_001020672chr16-24587884245919602458936124591960424587884,24589361,24591253,24591915,24587899,24589454,24591394,24591960,
HAMPNM_001195312chr19+35740372357404623574037235740462135740372,35740462,
Slc12a3NM_001205311chr20+448823754493151144882375449315032644882375,44884178,44885392,44888016,44888383,44888914,44890729,44891033,44895045,44896015,44896489,44897078,44899288,44900626,44 ...44882617,44884325,44885468,44888112,44888523,44889025,44890842,44891163,44895128,44896172,44896597,44897202,44899390,44900782,44 ...
ANAPC15NM_001199361chr12-85107571851083668510787185108237385107571,85108155,85108303,85108123,85108238,85108366,
ANAPC15NM_001199361chr14-67243786672469266724408367245479567243786,67244290,67244746,67245397,67246844,67244131,67244354,67244807,67245486,67246926,
EXOSC7NM_001251892chr2+9997832310001225699978346100012125899978323,99990348,99990755,99998269,100002677,100006386,100008213,100012020,99978403,99990450,99990850,99998434,100002750,100006509,100008369,100012256,
GALTNM_001258332chr15-44485957444899754448611144489362944485957,44487008,44487488,44487675,44488115,44488397,44488610,44489312,44489778,44486192,44487163,44487572,44487808,44488235,44488457,44488740,44489482,44489975,
LOC103832166NM_001301972chr18-20963597209646952096359720964695620963597,20963900,20964035,20964404,20964431,20964554,20963672,20963911,20964356,20964413,20964524,20964695,
LOC103832166NM_001301972chr5-98294819983460039829481998346003398294819,98303640,98345907,98295011,98303709,98346003,
LOC103832166NM_001301972chr5-98409810985592029840981098559202398409810,98558376,98559103,98410002,98558451,98559202,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.