Schema for xenoMrna
  Database: melGal1    Primary Table: xenoMrna    Row Count: 5,567,651   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 592int(10) unsigned Number of bases that match that aren't repeats
misMatches 86int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 4int(10) unsigned Number of inserts in query
qBaseInsert 105int(10) unsigned Number of bases inserted in query
tNumInsert 6int(10) unsigned Number of inserts in target
tBaseInsert 5709int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName CR405839varchar(255) Query sequence name
qSize 895int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 783int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 204065131int(10) unsigned Target sequence size
tStart 7323int(10) unsigned Alignment start position in target
tEnd 13710int(10) unsigned Alignment end position in target
blockCount 7int(10) unsigned Number of blocks in alignment
blockSizes 143,107,160,11,34,63,160,longblob Size of each block
qStarts 0,143,250,470,507,558,623,longblob Start of each block in query.
tStarts 204051421,204057069,2040572...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      melGal1.all_est.qName (via xenoMrna.qName)
      melGal1.all_mrna.qName (via xenoMrna.qName)
      melGal1.xenoRefFlat.name (via xenoMrna.qName)
      melGal1.xenoRefGene.name (via xenoMrna.qName)
      melGal1.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5855928600410565709+-CR4058398950783chr12040651317323137107143,107,160,11,34,63,160,0,143,250,470,507,558,623,204051421,204057069,204057274,204057442,204057530,204057582,204057648,
5855889400410365707+-CR3872799873788chr12040651317323137127145,107,160,11,36,63,160,3,148,255,475,510,563,628,204051419,204057069,204057274,204057442,204057528,204057582,204057648,
5855095900312455698+-BX93560811533641056chr12040651317485137516184,107,160,17,36,64,364,548,655,864,939,992,204051380,204057069,204057274,204057485,204057528,204057582,
585464105000025603+-CR38512510250569chr12040651317502136743107,107,355,0,107,214,204051457,204057069,204057274,
585543103000025603+-CR38885410989655chr12040651317502137513184,107,355,9,193,300,204051380,204057069,204057274,
5855529400157825597+-M8807220463731597chr12040651317508137514184,113,74,275,373,557,670,1322,204051380,204057069,204057274,204057348,
585253660012425627+-CR391386719311654chr1204065131767913625333,108,178,311,368,476,204051506,204057068,204057274,
58534797001225605+-BX931556845373819chr12040651317679137283159,107,178,373,534,641,204051403,204057069,204057274,
58536195000035789+-BX93588617196031059chr1204065131767913924413,158,107,178,603,616,774,881,204051207,204051406,204057069,204057274,
58540150000025603+-CR385728879179630chr12040651317697137513184,107,160,179,363,470,204051380,204057069,204057274,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.