Schema for wgEncodeGencodeUniProtVM34
  Database: mm39    Primary Table: wgEncodeGencodeUniProtVM34    Row Count: 70,232   Data last updated: 2024-01-11
Format description: GENCODE transcript to UniProt peptide mapping
On download server: MariaDB table dump directory
fieldexampleSQL type info description
transcriptId ENSMUST00000000001.5varchar(255) values GENCODE transcript identifier
acc Q9DC51varchar(255) values UniProt/Swiss-Prot accession
name Q9DC51.180varchar(255) values UniProt/Swiss-Prot entry name
dataset SwissProtenum('SwissProt', 'TrEMBL') values UniProt dataset

Connected Tables and Joining Fields
        mm39.wgEncodeGencodeAttrsVM34.transcriptId (via wgEncodeGencodeUniProtVM34.transcriptId)

Sample Rows
 
transcriptIdaccnamedataset
ENSMUST00000000001.5Q9DC51Q9DC51.180SwissProt
ENSMUST00000000003.14O08976O08976.147SwissProt
ENSMUST00000000003.14Q3UV89Q3UV89.128TrEMBL
ENSMUST00000000010.9P20615P20615.170SwissProt
ENSMUST00000000028.14Q3UI99Q3UI99.116TrEMBL
ENSMUST00000000028.14Q9Z1X9Q9Z1X9.145SwissProt
ENSMUST00000000033.12P09535P09535.184SwissProt
ENSMUST00000000049.6Q01339Q01339.174SwissProt
ENSMUST00000000058.7Q9WVC3Q9WVC3.161SwissProt
ENSMUST00000000080.8Q8BPQ2Q8BPQ2.158TrEMBL

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.