Schema for kgProtMap
  Database: mm8    Primary Table: kgProtMap    Row Count: 29,531   Data last updated: 2006-02-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 76smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1941int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName Q5GH67varchar(255) values Query sequence name
qSize 1941int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 1941int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 197069962int(10) unsigned range Target sequence size
tStart 3206105int(10) unsigned range Alignment start position in target
tEnd 3661429int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 944,200,797,longblob   Size of each block
qStarts 0,944,1144,longblob   Start of each block in query.
tStarts 3206105,3411782,3660632,longblob   Start of each block in target.

Connected Tables and Joining Fields
        go.goaPart.dbObjectId (via kgProtMap.qName)
      knownGeneV39.kgProtAlias.alias (via kgProtMap.qName)
      knownGeneV39.kgSpAlias.spID (via kgProtMap.qName)
      knownGeneV39.kgXref.spID (via kgProtMap.qName)
      mm8.kgProtAlias.alias (via kgProtMap.qName)
      mm8.kgSpAlias.spID (via kgProtMap.qName)
      mm8.kgXref.spID (via kgProtMap.qName)
      proteome.spOldNew.acc (via kgProtMap.qName)
      proteome.spReactomeEvent.spID (via kgProtMap.qName)
      proteome.spReactomeId.spID (via kgProtMap.qName)
      uniProt.accToKeyword.acc (via kgProtMap.qName)
      uniProt.accToTaxon.acc (via kgProtMap.qName)
      uniProt.citation.acc (via kgProtMap.qName)
      uniProt.comment.acc (via kgProtMap.qName)
      uniProt.description.acc (via kgProtMap.qName)
      uniProt.displayId.acc (via kgProtMap.qName)
      uniProt.extDbRef.acc (via kgProtMap.qName)
      uniProt.feature.acc (via kgProtMap.qName)
      uniProt.gene.acc (via kgProtMap.qName)
      uniProt.geneLogic.acc (via kgProtMap.qName)
      uniProt.info.acc (via kgProtMap.qName)
      uniProt.otherAcc.acc (via kgProtMap.qName)
      uniProt.protein.acc (via kgProtMap.qName)
      visiGene.gene.uniProt (via kgProtMap.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
7619410000000-Q5GH67194101941chr1197069962320610536614293944,200,797,0,944,1144,3206105,3411782,3660632,
6133390000000+Q3USV43390339chr1197069962367065136709901339,0,3670651,
61862850000000-P56716628506285chr11970699624334683434290635489,172,624,0,5489,5661,4334683,4341990,4342282,
6198730000000-Q61473-28730873chr1197069962448179944826721873,0,4481799,
61912570000000-Q61473125701257chr1197069962448179944834872950,307,0,950,4481799,4483180,
6216120000000-Q9CPP56120612chr119706996247645354775758562,124,166,155,105,0,62,186,352,507,4764535,4767605,4772648,4774031,4775653,
6218850000000-Q9CPR58850885chr1197069962476654747757585335,124,166,155,105,0,335,459,625,780,4766547,4767605,4772648,4774031,4775653,
6216900000000+P978236900690chr119706996247979944835094969,32,66,48,71,74,102,177,51,0,69,101,167,215,286,360,462,639,4797994,4798535,4818664,4820348,4822391,4827081,4829467,4831036,4835043,
6216570000000+P97823-26636663chr119706996247980004831237863,32,66,48,71,74,102,201,6,69,101,167,215,286,360,462,4798000,4798535,4818664,4820348,4822391,4827081,4829467,4831036,
779030000000+P107119030903chr1197069962484799448864421063,63,106,88,146,57,155,147,72,6,0,63,126,232,320,466,523,678,825,897,4847994,4857550,4868107,4876824,4879537,4880820,4881995,4883497,4885014,4886436,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.