Schema for orfeomeMrna
  Database: mm9    Primary Table: orfeomeMrna    Row Count: 2,279   Data last updated: 2018-10-16
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 619smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1259int(10) unsigned range Number of bases that match that aren't repeats
misMatches 1int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 431int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName BC148437varchar(255) values Query sequence name
qSize 1321int(10) unsigned range Query sequence size
qStart 32int(10) unsigned range Alignment start position in query
qEnd 1292int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 197195432int(10) unsigned range Target sequence size
tStart 4481798int(10) unsigned range Alignment start position in target
tEnd 4483489int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 951,309,longblob   Size of each block
qStarts 29,980,longblob   Start of each block in query.
tStarts 4481798,4483180,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via orfeomeMrna.qName)
      hgFixed.gbSeq.acc (via orfeomeMrna.qName)
      hgFixed.imageClone.acc (via orfeomeMrna.qName)
      mm9.all_mrna.qName (via orfeomeMrna.qName)
      mm9.mrnaOrientInfo.name (via orfeomeMrna.qName)
      mm9.orfeomeGenes.name (via orfeomeMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6191259100001431-BC1484371321321292chr1197195432448179844834892951,309,29,980,4481798,4483180,
6191259100001431-BC1530211321321292chr1197195432448179844834892951,309,29,980,4481798,4483180,
115530000016438915-BC1602861615331586chr11971954328353557879402517157,111,93,153,72,117,39,130,131,83,103,42,44,58,57,135,28,29,186,297,390,543,615,732,771,901,1032,1115,1218,1260,1304,1362,1419,1554,8353557,8404283,8435107,8438060,8453474,8455517,8544805,8573285,8585492,8597150,8614859,8667887,8668017,8669153,8672053,8772843, ...
8235360560002887466+BC1563493655343626chr119719543210035166101262242999,103,104,81,99,395,87,71,94,58,206,134,79,130,148,153,113,150,147,105,67,118,140,141,47,64,110,139,210,34,133,236,340,421,520,915,1002,1073,1167,1225,1431,1565,1644,1774,1922,2075,2188,2338,2485,2590,2657,2775,2915,3056,3103,3167,3 ...10035166,10037504,10048800,10054413,10055403,10056506,10064940,10067252,10072333,10073581,10075827,10078131,10078962,10080268,10 ...
72375300000620669-BC14878781434787chr119719543218105709181271317128,89,98,149,91,135,63,27,155,244,342,491,582,717,18105709,18112818,18114312,18118722,18120239,18124119,18127068,
72375100000620669-BC14150881434785chr119719543218105711181271317126,89,98,149,91,135,63,29,155,244,342,491,582,717,18105711,18112818,18114312,18118722,18120239,18124119,18127068,
724258000001713-BC14878231934292chr119719543218226553182275242188,70,27,215,18226553,18227454,
724256000001713-BC14150231934290chr119719543218226555182275242186,70,29,215,18226555,18227454,
72419000000113692-BC14032925031221chr119719543218241282182551642132,58,29,161,18241282,18255106,
7242000000014359-BC15675925931231chr119719543218250605182551642142,58,28,170,18250605,18255106,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.