Schema for xenoRefFlat
  Database: mm9    Primary Table: xenoRefFlat    Row Count: 193,733   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName CTNNB1varchar(255) values Name of gene as it appears in genome browser.
name NM_001257918varchar(255) values Name of gene
chrom chr9varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 120842571int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 120869625int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 120859338int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 120868635int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 19int(10) unsigned range Number of exons
exonStarts 120842571,120842656,1208593...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 120842611,120842690,1208593...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      mm9.xenoMrna.qName (via xenoRefFlat.name)
      mm9.xenoRefGene.name (via xenoRefFlat.name)
      mm9.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CTNNB1NM_001257918chr9+12084257112086962512085933812086863519120842571,120842656,120859329,120859639,120860011,120860384,120860704,120861993,120864265,120864442,120864931,120866224,12086663 ...120842611,120842690,120859351,120859867,120860265,120860624,120860912,120862121,120864365,120864785,120865090,120866344,12086678 ...
OPA1NM_130837chr16+295794552965481729579625296490874429579455,29586103,29587053,29588337,29589759,29597671,29602297,29605597,29607768,29608438,29610753,29610939,29611482,29611636,29 ...29579657,29586420,29587150,29588448,29589834,29597782,29602351,29605702,29607855,29608552,29610834,29611014,29611554,29611736,29 ...
EIF2 BETANM_001085141chr8-53281456532823745328145653282374353281456,53281840,53282350,53281831,53281918,53282374,
mapkapk3.SNM_001096847chr9-10715974210719159410715974210719159411107159742,107160572,107160664,107161144,107162375,107162424,107164208,107164753,107165960,107191437,107191450,107159832,107160575,107160785,107161220,107162424,107162499,107164288,107164817,107166093,107191439,107191594,
PIGKNM_005482chr3+15238002515245373715238002515244847616152380025,152385448,152401149,152403092,152405452,152407408,152407677,152410564,152429397,152448359,152448899,152453270,15245333 ...152380079,152385540,152401285,152403204,152405549,152407526,152407788,152410720,152429487,152448481,152448926,152453291,15245340 ...
SH2D3CNM_005489chr2+325832823261048432583282326100911332583282,32600264,32601352,32602541,32604672,32604949,32606471,32607033,32608133,32608508,32609915,32610320,32610430,32583315,32600390,32601809,32602666,32604947,32605205,32606587,32607205,32608245,32608715,32610268,32610380,32610484,
TOM1NM_005488chr8+775576507759400877557674775933031577557650,77571891,77574089,77575405,77575821,77576047,77578472,77581053,77582339,77582711,77584331,77588292,77591420,77593146,77 ...77557726,77571977,77574166,77575556,77575955,77576181,77578592,77581187,77582373,77582804,77584451,77588368,77591480,77593358,77 ...
TOM1NM_005488chr6+1285948951285971141285949301285964092128594895,128597017,128596464,128597114,
TOM1L1NM_005486chr11-905081489054889690508152905488841590508148,90510669,90511145,90513224,90519094,90519416,90519464,90523069,90532399,90534146,90534986,90535983,90544548,90546375,90 ...90508211,90510723,90511199,90513281,90519145,90519419,90519522,90523205,90532514,90534245,90535100,90536133,90544627,90546460,90 ...
kifap3bNM_001144045chr1+16572408016584593716572408016584593720165724080,165727382,165744499,165745952,165746090,165747965,165755818,165756009,165759266,165778826,165786166,165787602,16579208 ...165724212,165727524,165744596,165746079,165746093,165748062,165755997,165756012,165759428,165778892,165786275,165787715,16579225 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.