Schema for estOrientInfo
  Database: monDom4    Primary Table: estOrientInfo    Row Count: 449   Data last updated: 2016-04-13
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 744smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 20864151int(10) unsigned range Start position in chromosome
chromEnd 20866454int(10) unsigned range End position in chromosome
name DR038220varchar(255) values Accession of EST
intronOrientation -1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      monDom4.all_est.qName (via estOrientInfo.name)
      monDom4.est.qName (via estOrientInfo.name)
      monDom4.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
744chr12086415120866454DR038220-10000
744chr12086799520879244DR03822220000
744chr12090016520967337DR03822220000
744chr12090751720909799DR038220-10000
744chr12092603420931779DR03822930000
744chr12094844420950746DR038220-10000
1441chr1112235056112235280DR0417320028051
1575chr1129822008129822205DR03823300000
2279chr1222105232222105837DR038230002200
3092chr1328636476328638209DR0382371100330

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.