Schema for intronEst
  Database: monDom5    Primary Table: intronEst    Row Count: 164   Data last updated: 2011-03-30
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 661smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 623int(10) unsigned range Number of bases that match that aren't repeats
misMatches 6int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 1674int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName DR038220varchar(255) values Query sequence name
qSize 630int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 630int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 748055161int(10) unsigned range Target sequence size
tStart 10062383int(10) unsigned range Alignment start position in target
tEnd 10064686int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 343,140,146,longblob   Size of each block
qStarts 0,344,484,longblob   Start of each block in query.
tStarts 10062383,10063156,10064540,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      monDom5.all_est.qName (via intronEst.qName)
      monDom5.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6616236001121674+DR0382206300630chr174805516110062383100646863343,140,146,0,344,484,10062383,10063156,10064540,
66142340000310822-DR03822244619446chr17480551611006622710077476447,177,162,41,0,47,224,386,10066227,10072139,10076604,10077435,
66242250000366745-DR03822244619446chr17480551611009839710165569447,177,162,41,0,47,224,386,10098397,10104288,10164698,10165528,
6626254001121653+DR0382206300630chr174805516110105749101080313343,140,146,0,344,484,10105749,10106522,10107885,
6625085000045232-DR03822953926539chr174805516110124266101300115133,35,161,150,34,0,133,168,329,479,10124266,10124400,10128723,10129551,10129977,
6626236001121673+DR0382206300630chr174805516110146676101489783343,140,146,0,344,484,10146676,10147449,10148832,
30923466000011381+DR0382373640352chr1748055161328636476328638209288,264,0,88,328636476,328637945,
32087341000062128-DR0382317350735chr1748055161343911809343914672769,60,90,93,50,154,219,0,69,129,219,312,362,516,343911809,343912148,343912300,343913065,343913657,343914298,343914453,
3999149000001240+DR041725338189338chr1748055161447510898447511287218,131,189,207,447510898,447511156,
3999234000001427-DR04172625925259chr1748055161447543767447544428216,218,0,16,447543767,447544210,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.