Schema for xenoMrna
  Database: monDom5    Primary Table: xenoMrna    Row Count: 5,223,563   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 1008smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 56int(10) unsigned Number of bases that match that aren't repeats
misMatches 13int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName JU012139varchar(255) Query sequence name
qSize 233int(10) unsigned Query sequence size
qStart 78int(10) unsigned Alignment start position in query
qEnd 147int(10) unsigned Alignment end position in query
tName chrUnvarchar(255) Target sequence name
tSize 103241611int(10) unsigned Target sequence size
tStart 55528014int(10) unsigned Alignment start position in target
tEnd 55528083int(10) unsigned Alignment end position in target
blockCount 1int(10) unsigned Number of blocks in alignment
blockSizes 69,longblob Size of each block
qStarts 78,longblob Start of each block in query.
tStarts 55528014,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      monDom5.all_est.qName (via xenoMrna.qName)
      monDom5.all_mrna.qName (via xenoMrna.qName)
      monDom5.refGene.name (via xenoMrna.qName)
      monDom5.refSeqAli.qName (via xenoMrna.qName)
      monDom5.xenoRefFlat.name (via xenoMrna.qName)
      monDom5.xenoRefGene.name (via xenoMrna.qName)
      monDom5.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
10085613000000++JU01213923378147chrUn1032416115552801455528083169,78,55528014,
10085613000000++JU01399222246115chrUn1032416115552801455528083169,46,55528014,
10085217000000++JL074418248146215chrUn1032416115552801555528084169,146,55528015,
96613260000000+-JL6531862135197chrUn10324161150011949500121411192,5,53229470,
9666422220041973192+-HP8490901217211082chrUn1032416115001194950013005530,156,285,195,198,21,203,360,670,884,53228606,53228786,53228942,53229251,53229464,
966108520000117033+-EZ9330591940160chrUn1032416115001194950029142232,128,0,32,53212469,53229534,
966764279006277617308+-HP87358714311031423chrUn1032416115001194950030300893,38,96,444,84,96,57,135,103,196,245,552,1013,1099,1230,1288,53211311,53228436,53228483,53228789,53229251,53229338,53229470,53229527,
966783296006331717359+-HP95792217212321642chrUn1032416115001195250030390833,30,111,93,101,333,207,171,232,408,445,646,766,867,1233,1471,53211221,53211392,53211428,53228663,53228783,53228885,53229251,53229488,
9668223180062466243+-AK174002155211387chrUn1032416115001197650013359745,192,27,90,435,189,162,1,142,361,418,538,1006,1225,53228252,53228393,53228609,53228666,53228786,53229254,53229473,
9668739002200+-EZ9214812554132chrUn1032416115001197950012105315,15,96,4,20,36,53229506,53229521,53229536,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.