Schema for xenoMrna
  Database: myoLuc2    Primary Table: xenoMrna    Row Count: 8,289,179   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 80int(10) unsigned Number of bases that match that aren't repeats
misMatches 40int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 31230int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JT490456varchar(255) Query sequence name
qSize 337int(10) unsigned Query sequence size
qStart 160int(10) unsigned Alignment start position in query
qEnd 280int(10) unsigned Alignment end position in query
tName AAPE02055386varchar(255) Target sequence name
tSize 132468int(10) unsigned Target sequence size
tStart 2686int(10) unsigned Alignment start position in target
tEnd 34036int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 60,60,longblob Size of each block
qStarts 160,220,longblob Start of each block in query.
tStarts 98432,129722,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      myoLuc2.all_mrna.qName (via xenoMrna.qName)
      myoLuc2.xenoRefFlat.name (via xenoMrna.qName)
      myoLuc2.xenoRefGene.name (via xenoMrna.qName)
      myoLuc2.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58580400000131230+-JT490456337160280AAPE02055386132468268634036260,60,160,220,98432,129722,
585924000140131224+-JT32677626130202AAPE02055386132468268634042266,66,30,136,98426,129716,
585924000133131224+-JT45174731494259AAPE02055386132468268634042266,66,94,193,98426,129716,
5851062400125412940+-AY23653840620404AAPE02055386132468835311423251,79,20,325,121045,124036,
585891400128312967+-AY06377046470456AAPE02055386132468835411424255,48,70,408,121044,124066,
5851042300125412940+-AY35905243453434AAPE02055386132468835611423251,76,53,358,121045,124036,
58515136002197269000+-AJ22417142945429AAPE02055386132468835777544352,60,75,45,188,354,54924,56629,124036,
58515136002197269000+-BC06269350675459AAPE02055386132468835777544352,60,75,75,218,384,54924,56629,124036,
58515136002197269000+-BC06917042945429AAPE02055386132468835777544352,60,75,45,188,354,54924,56629,124036,
585741600126812959+-JU65870046376434AAPE02055386132468837611425248,42,76,392,121043,124050,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.