Schema for xenoRefSeqAli
  Database: nomLeu3    Primary Table: xenoRefSeqAli    Row Count: 238,771   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1786int(10) unsigned range Number of bases that match that aren't repeats
misMatches 75int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 7int(10) unsigned range Number of inserts in query
qBaseInsert 197int(10) unsigned range Number of bases inserted in query
tNumInsert 9int(10) unsigned range Number of inserts in target
tBaseInsert 13647int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NR_027334varchar(255) values Query sequence name
qSize 2620int(10) unsigned range Query sequence size
qStart 13int(10) unsigned range Alignment start position in query
qEnd 2071int(10) unsigned range Alignment end position in query
tName chr10varchar(255) values Target sequence name
tSize 106955855int(10) unsigned range Target sequence size
tStart 7914int(10) unsigned range Alignment start position in target
tEnd 23422int(10) unsigned range Alignment end position in target
blockCount 12int(10) unsigned range Number of blocks in alignment
blockSizes 209,85,82,249,118,127,335,2...longblob   Size of each block
qStarts 13,222,307,473,723,842,1027...longblob   Start of each block in query.
tStarts 106932433,106942600,1069440...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)
      nomLeu3.xenoMrna.qName (via xenoRefSeqAli.qName)
      nomLeu3.xenoRefFlat.name (via xenoRefSeqAli.qName)
      nomLeu3.xenoRefGene.name (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585178675007197913647+-NR_0273342620132071chr1010695585579142342212209,85,82,249,118,127,335,233,49,309,26,39,13,222,307,473,723,842,1027,1362,1595,1678,2004,2032,106932433,106942600,106944063,106946257,106946600,106946728,106946913,106947249,106947486,106947567,106947876,106947902,
58524243500214289487++NM_003422262022603chr10106955855858620532918,183,436,184,71,121,392,1032,22,2,20,203,639,823,894,1015,1444,2581,8586,8605,10746,11648,12579,12768,18944,19373,20510,
1101044270000858053++NM_001195280107101071chr1112369045739004547390636719218,74,70,84,109,90,153,28,245,0,218,292,362,446,555,645,798,826,39004547,39010089,39015165,39034974,39036499,39044244,39045321,39062200,39063426,
585179035300619479358++NM_14581934971982535chr10106955855887920380963,87,14,321,168,115,392,203,780,198,288,382,402,723,984,1099,1528,1755,8879,10750,10847,10861,11648,12774,18944,19373,19600,
585175833400518277565++NM_00110847036034102684chr1010695585510723203808114,22,294,168,106,392,203,793,410,531,578,872,1142,1248,1677,1891,10723,10847,10888,11648,12783,18944,19373,19587,
731849200001152458++NM_001095345984479755chr1010695585519798172532289,187,479,568,19798,172345,
5856952700321963998++NR_00283796120961chr101069558552335828078833,96,39,104,64,197,92,97,20,257,353,392,496,560,758,864,23358,26738,26966,27106,27517,27666,27863,27981,
696146446001461424231++NM_213649155601556chr3157873769145822021460794315178,75,20,27,55,26,54,57,66,80,115,86,118,410,143,0,178,299,319,346,401,427,481,538,604,684,799,885,1003,1413,14582202,14583830,14586000,14587273,14587385,14588596,14590308,14590443,14590637,14591626,14593237,14600549,14602022,14607388,14 ...
585815113013452483571++NM_0011084711963141479chr10106955855236632817510109,42,96,39,104,64,235,43,87,122,14,363,681,777,816,920,984,1221,1264,1357,23663,24009,26738,26966,27106,27517,27666,27911,27966,28053,
5857439900425073656++NM_001168469122821094chr101069558552367728175995,96,39,104,64,235,43,44,122,2,290,386,425,529,593,830,920,972,23677,26738,26966,27106,27517,27666,27911,28009,28053,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.