Schema for intronEst
  Database: ornAna2    Primary Table: intronEst    Row Count: 3,521   Data last updated: 2016-01-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 588smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 151int(10) unsigned range Number of bases that match that aren't repeats
misMatches 1int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 10int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 77803int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName DW586808varchar(255) values Query sequence name
qSize 267int(10) unsigned range Query sequence size
qStart 38int(10) unsigned range Alignment start position in query
qEnd 200int(10) unsigned range Alignment end position in query
tName chrUn_DS180971v1varchar(255) values Target sequence name
tSize 568384int(10) unsigned range Target sequence size
tStart 433565int(10) unsigned range Alignment start position in target
tEnd 511520int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 38,88,26,longblob   Size of each block
qStarts 67,105,203,longblob   Start of each block in query.
tStarts 433565,511395,511494,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      ornAna2.all_est.qName (via intronEst.qName)
      ornAna2.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
588151100110277803-DW58680826738200chrUn_DS180971v1568384433565511520338,88,26,67,105,203,433565,511395,511494,
591291100221688-DW58653333541335chrUn_DS181237v12391570871804872784453,106,80,53,0,54,160,241,871804,871857,872651,872731,
5872540001931449-DW58673041273336chrUn_DS181372v1838734337515339218462,70,100,22,76,138,208,317,337515,338261,339086,339196,
5872619001121439+DW58648939361332chrUn_DS181372v1838734337515339224462,70,30,108,61,123,193,224,337515,338261,339086,339116,
5902690000035417-DW58689140968337chrUn_DS181649v1999446693420699106490,145,6,28,72,162,307,313,693420,694707,694960,699078,
5853050000021748+DW586894411105410chrUn_DS187102v138408238144343130,83,92,105,235,318,2381,3005,4342,
585148000002689+DW586481399189337chrUn_DS215809v149327861623367,45,36,189,256,301,786,930,1587,
585140100172696-DW58667442133181chrUn_DS215809v149327861623367,46,28,240,307,360,786,930,1595,
7362867000028662+DW58651930512305chrX52778673919861234198701893101,66,126,12,113,179,19861234,19869255,19870063,
6425801002289513-EE67807160825608chr101124376275143247524418913,123,78,117,170,34,26,16,4,0,13,136,214,331,502,537,563,579,7514324,7514753,7515691,7517967,7519156,7524334,7524370,7524397,7524414,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.