Schema for intronEst
  Database: oviAri1    Primary Table: intronEst    Row Count: 131,771   Data last updated: 2016-04-13
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1288smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 419int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 670int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName BG874282varchar(255) values Query sequence name
qSize 574int(10) unsigned range Query sequence size
qStart 132int(10) unsigned range Alignment start position in query
qEnd 552int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 299839927int(10) unsigned range Target sequence size
tStart 92159527int(10) unsigned range Alignment start position in target
tEnd 92160616int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 36,47,9,209,118,longblob   Size of each block
qStarts 22,59,106,115,324,longblob   Start of each block in query.
tStarts 92159527,92159563,92159612,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      oviAri1.all_est.qName (via intronEst.qName)
      oviAri1.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
1288419000113670-BG874282574132552chr12998399279215952792160616536,47,9,209,118,22,59,106,115,324,92159527,92159563,92159612,92159622,92160498,
14404380001101530010+BG8742465630539chr1299839927112134217112164665660,52,123,105,5,93,0,60,112,235,340,446,112134217,112156403,112160937,112162364,112162472,112164572,
1804160015531223616+BG8742885860583chr12998399271131136301131178175124,56,370,8,13,0,134,190,561,570,113113630,113115728,113117426,113117796,113117804,
905552401336213565+BG8742605990593chr116713789041961231419753535349,75,100,12,21,0,383,458,559,572,41961231,41973126,41975220,41975320,41975332,
974533001004518-BG8742655350534chr116713789051090275510913275121,142,66,134,71,1,122,264,330,464,51090275,51090480,51090856,51091039,51091256,
96350900022366722+BG87427458856588chr146934255149599146496063778132,31,55,162,33,6,32,58,56,188,241,296,458,492,498,530,49599146,49602596,49603897,49604486,49604973,49605006,49606286,49606319,
84740010016633758+BG8742485130467chr16771876353445385534458014434,149,111,107,0,100,249,360,34453855,34456926,34457795,34457907,
977550120042131149+BG8742495970583chr19649886505141029751412008734,65,239,39,32,26,127,0,34,99,339,396,429,456,51410297,51410625,51411539,51411778,51411823,51411855,51411881,
15785553002363658-BG8742635610561chr2263237078130182008130186224826,43,25,77,94,49,183,61,0,26,69,94,173,268,317,500,130182008,130182035,130182869,130182895,130183286,130183380,130184826,130186163,
15784880032332865-BG8742624940494chr22632370781301828681301862245104,94,49,183,61,0,106,201,250,433,130182868,130183286,130183380,130184826,130186163,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.