Schema for xenoMrna
  Database: oviAri3    Primary Table: xenoMrna    Row Count: 4,746,601   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 73smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 63int(10) unsigned Number of bases that match that aren't repeats
misMatches 8int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 3int(10) unsigned Number of inserts in target
tBaseInsert 233955int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName JL802248varchar(255) Query sequence name
qSize 252int(10) unsigned Query sequence size
qStart 136int(10) unsigned Alignment start position in query
qEnd 207int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 275612895int(10) unsigned Target sequence size
tStart 556int(10) unsigned Alignment start position in target
tEnd 234582int(10) unsigned Alignment end position in target
blockCount 4int(10) unsigned Number of blocks in alignment
blockSizes 23,18,3,27,longblob Size of each block
qStarts 136,159,177,180,longblob Start of each block in query.
tStarts 556,233699,233748,234555,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      oviAri3.all_est.qName (via xenoMrna.qName)
      oviAri3.all_mrna.qName (via xenoMrna.qName)
      oviAri3.refGene.name (via xenoMrna.qName)
      oviAri3.refSeqAli.qName (via xenoMrna.qName)
      oviAri3.xenoRefFlat.name (via xenoMrna.qName)
      oviAri3.xenoRefGene.name (via xenoMrna.qName)
      oviAri3.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
7363800003233955++JL802248252136207chr1275612895556234582423,18,3,27,136,159,177,180,556,233699,233748,234555,
58532613000000++JO456256564220559chr1275612895446548041339,220,4465,
58524218000000++JU76890931127287chr1275612895778180411260,27,7781,
5859927000000++JP02740020117143chr127561289549776499021126,17,49776,
73124440021384442453++JU707073569232538chr127561289560152502773540,19,57,18,34,232,272,386,486,504,60152,276896,276935,497979,502739,
5851430114018513187377++AB510901170801693chr1275612895798818882011120,107,253,164,262,212,16,160,93,132,43,0,120,227,480,758,1020,1244,1263,1423,1517,1650,79881,86099,86209,86780,87554,88151,88373,88390,88552,88645,88777,
585602170180026416++JO6084027300637chr127561289579891869443110,363,164,0,110,473,79891,86099,86780,
585151143018111457363++JO608403168601686chr127561289579891888266110,363,164,277,275,383,0,110,473,751,1028,1303,79891,86099,86780,87554,88167,88443,
58545096018324837163++AB85088294217829chr127561289579896876234106,250,157,51,17,231,489,778,79896,86211,86787,87572,
585480102018455647458++AB8986771781261182chr127561289579896879545106,250,157,51,36,26,240,498,787,1146,79896,86211,86787,87572,87918,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.