Schema for estOrientInfo
  Database: oviAri4    Primary Table: estOrientInfo    Row Count: 390,560   Data last updated: 2018-04-26
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 895smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr11varchar(255) values Reference sequence chromosome or scaffold
chromStart 40738446int(10) unsigned range Start position in chromosome
chromEnd 40738707int(10) unsigned range End position in chromosome
name AF071004varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 10smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 34smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      oviAri4.all_est.qName (via estOrientInfo.name)
      oviAri4.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
895chr114073844640738707AF0710040100340
836chr183291651632916683AF0710070120370
2410chr2239206992239207141AF0710060100300
783chr232601870126018885AF07100503000
1327chrX9738480597385064AJ24913200000
1246chr18673213486737177BG874282360270
1251chr18734098487341660BG87427100000
1379chr1104173717104201861BG87424650000
1387chr1105213944105218167BG87428820000
2386chr1236101450236101854BG87428310000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.