Schema for mrnaOrientInfo
  Database: oviAri4    Primary Table: mrnaOrientInfo    Row Count: 5,598   Data last updated: 2018-05-25
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 588smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 405567int(10) unsigned range Start position in chromosome
chromEnd 406188int(10) unsigned range End position in chromosome
name DQ239670varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      oviAri4.all_mrna.qName (via mrnaOrientInfo.name)
      oviAri4.refFlat.name (via mrnaOrientInfo.name)
      oviAri4.refGene.name (via mrnaOrientInfo.name)
      oviAri4.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
588chr1405567406188DQ23967000000
610chr134007063403487AF4504532160390
612chr135894373593297AF12928830000
621chr148366694837425DQ23968400000
633chr163606986361264FJ96941500000
636chr167545966774139AJ54416060000
638chr170402917050250HQ2633823230430
79chr170402917104355HQ2633843230430
79chr170402917130320HQ2633833230430
79chr170402917161810AB018477300200

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.