Schema for xenoMrna
  Database: panTro6    Primary Table: xenoMrna    Row Count: 5,346,965   Data last updated: 2018-07-31
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 1853int(10) unsigned Number of bases that match that aren't repeats
misMatches 19int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 1int(10) unsigned Number of bases inserted in query
tNumInsert 6int(10) unsigned Number of inserts in target
tBaseInsert 234int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName AK123641varchar(255) Query sequence name
qSize 3079int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 1873int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 224244399int(10) unsigned Target sequence size
tStart 0int(10) unsigned Alignment start position in target
tEnd 2106int(10) unsigned Alignment end position in target
blockCount 7int(10) unsigned Number of blocks in alignment
blockSizes 594,32,489,323,198,48,188,longblob Size of each block
qStarts 0,594,626,1116,1439,1637,1685,longblob Start of each block in query.
tStarts 224242293,224242931,2242429...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      panTro6.all_est.qName (via xenoMrna.qName)
      panTro6.all_mrna.qName (via xenoMrna.qName)
      panTro6.refGene.name (via xenoMrna.qName)
      panTro6.refSeqAli.qName (via xenoMrna.qName)
      panTro6.xenoRefFlat.name (via xenoMrna.qName)
      panTro6.xenoRefGene.name (via xenoMrna.qName)
      panTro6.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58518531900116234+-AK123641307901873chr1224244399021067594,32,489,323,198,48,188,0,594,626,1116,1439,1637,1685,224242293,224242931,224242985,224243497,224243960,224244161,224244211,
585794711500123446214245++LF38393913082157413082chr122424439901230724183,40,255,419,472,22,1111,190,50,314,945,40,246,179,869,21,879,477,31,115,663,158,169,214,1574,1757,1797,2052,2471,2943,2965,4279,5009,5836,7078,8153,8193,8467,8660,9529,9550,10542,11022,11053,11169,12124,12699,12868,0,185,228,484,925,1419,1485,2729,3459,4274,5563,6638,6722,6997,7176,8047,8075,9067,9545,9627,9742,10698,11921,12093,
585425520015855412+-KA56574711511536chr12242443993316220624,77,108,29,167,72,1,25,160,268,297,464,224238179,224241878,224242535,224243197,224243660,224243996,
5853163800002541+-JO007989871318672chr12242443993461241371,190,93,318,389,579,224243158,224243630,224243960,
58543758000031065+-JO007987897203698chr122424439934619064147,65,190,93,203,350,415,605,224242493,224243164,224243630,224243960,
5859391170000910853+-JO0079811296411097chr1224244399346122551034,98,74,229,99,36,138,65,190,93,41,75,173,247,476,575,611,749,814,1004,224232144,224236374,224236938,224237974,224241845,224242025,224242502,224243164,224243630,224243960,
585730970000811082+-JO007984106741868chr122424439934612255934,98,71,102,36,138,65,190,93,41,75,173,244,346,382,520,585,775,224232144,224236374,224236938,224241842,224242025,224242502,224243164,224243630,224243960,
5857961860013796694++LH241774267715312550chr122424439935180271088,190,26,141,36,98,229,72,2,100,1531,1619,1809,1872,2013,2049,2147,2376,2448,2450,351,579,1170,1757,2339,2456,6196,7387,7511,7927,
5856225000000+-EZ59301813315102chr1224244399352439187,15,224243960,
5851175400001140+-JR70460951680251chr1224244399352663284,87,80,164,224243736,224243960,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.